Hb_000331_370

Information

Type -
Description -
Location Contig331: 297399-301471
Sequence    

Annotation

kegg
ID sly:101255800
description glyceraldehyde-3-phosphate dehydrogenase, cytosolic
nr
ID KHG15503.1
description Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
swissprot
ID P26520
description Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1
trembl
ID A0A0B0NLT1
description Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic OS=Gossypium arboreum GN=F383_01196 PE=3 SV=1
Gene Ontology
ID GO:0016620
description glyceraldehyde-3-phosphate cytosolic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34795: 297451-301112 , PASA_asmbl_34796: 301122-301274
cDNA
(Sanger)
(ID:Location)		 007_O12.ab1: 299053-301054 , 013_M18.ab1: 299335-301043 , 024_H04.ab1: 299052-301051 , 028_K01.ab1: 299293-301056 , 030_A14.ab1: 299045-301056 , 037_P11.ab1: 299025-301056 , 044_F17.ab1: 298991-301051 , 044_J09.ab1: 299040-301051 , 047_K06.ab1: 299272-301051

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_370 0.0 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
2 Hb_000107_080 0.0685314483 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
3 Hb_000002_480 0.0747892493 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
4 Hb_086639_080 0.0808872999 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000890_230 0.0870145415 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
6 Hb_002660_150 0.0929483335 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
7 Hb_000028_600 0.0968254899 - - glutaredoxin-1, grx1, putative [Ricinus communis]
8 Hb_000371_090 0.0980391799 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
9 Hb_000139_530 0.0985882105 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012651_010 0.1064941791 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
11 Hb_008406_180 0.1065472561 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
12 Hb_005797_010 0.1070270448 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
13 Hb_003998_040 0.1096079986 - - organic anion transporter, putative [Ricinus communis]
14 Hb_000172_510 0.1096863287 - - hypothetical protein B456_007G243100 [Gossypium raimondii]
15 Hb_007286_020 0.1096923596 - - hypothetical protein L484_010675 [Morus notabilis]
16 Hb_001500_110 0.1113818886 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000066_030 0.1118379715 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
18 Hb_000146_040 0.1141162019 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
19 Hb_004102_170 0.1167995456 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
20 Hb_000696_010 0.1168371086 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]

Gene co-expression network

sample Hb_000331_370 Hb_000331_370 Hb_000107_080 Hb_000107_080 Hb_000331_370--Hb_000107_080 Hb_000002_480 Hb_000002_480 Hb_000331_370--Hb_000002_480 Hb_086639_080 Hb_086639_080 Hb_000331_370--Hb_086639_080 Hb_000890_230 Hb_000890_230 Hb_000331_370--Hb_000890_230 Hb_002660_150 Hb_002660_150 Hb_000331_370--Hb_002660_150 Hb_000028_600 Hb_000028_600 Hb_000331_370--Hb_000028_600 Hb_000107_080--Hb_000890_230 Hb_004157_100 Hb_004157_100 Hb_000107_080--Hb_004157_100 Hb_000146_040 Hb_000146_040 Hb_000107_080--Hb_000146_040 Hb_001191_110 Hb_001191_110 Hb_000107_080--Hb_001191_110 Hb_000696_010 Hb_000696_010 Hb_000107_080--Hb_000696_010 Hb_000002_480--Hb_086639_080 Hb_012651_010 Hb_012651_010 Hb_000002_480--Hb_012651_010 Hb_000002_480--Hb_000890_230 Hb_000139_530 Hb_000139_530 Hb_000002_480--Hb_000139_530 Hb_000371_090 Hb_000371_090 Hb_000002_480--Hb_000371_090 Hb_086639_080--Hb_000139_530 Hb_007286_020 Hb_007286_020 Hb_086639_080--Hb_007286_020 Hb_000622_110 Hb_000622_110 Hb_086639_080--Hb_000622_110 Hb_004102_170 Hb_004102_170 Hb_086639_080--Hb_004102_170 Hb_008406_180 Hb_008406_180 Hb_000890_230--Hb_008406_180 Hb_000890_230--Hb_086639_080 Hb_000890_230--Hb_012651_010 Hb_052805_010 Hb_052805_010 Hb_002660_150--Hb_052805_010 Hb_169631_010 Hb_169631_010 Hb_002660_150--Hb_169631_010 Hb_000172_510 Hb_000172_510 Hb_002660_150--Hb_000172_510 Hb_004032_030 Hb_004032_030 Hb_002660_150--Hb_004032_030 Hb_010407_140 Hb_010407_140 Hb_002660_150--Hb_010407_140 Hb_003988_050 Hb_003988_050 Hb_000028_600--Hb_003988_050 Hb_000115_150 Hb_000115_150 Hb_000028_600--Hb_000115_150 Hb_000429_050 Hb_000429_050 Hb_000028_600--Hb_000429_050 Hb_002490_010 Hb_002490_010 Hb_000028_600--Hb_002490_010 Hb_002150_040 Hb_002150_040 Hb_000028_600--Hb_002150_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
90.1055 48.863 92.4959 270.865 76.7605 103.814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.9234 44.7427 64.3708 87.471 73.8905

CAGE analysis