Hb_000107_080

Information

Type -
Description -
Location Contig107: 60095-65192
Sequence    

Annotation

kegg
ID rcu:RCOM_0341930
description hypothetical protein
nr
ID XP_012080841.1
description PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K344
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16206 PE=4 SV=1
Gene Ontology
ID GO:0005783
description PREDICTED: uncharacterized protein LOC105641009

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02131: 60550-65156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_080 0.0 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
2 Hb_000331_370 0.0685314483 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
3 Hb_000890_230 0.0860545856 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
4 Hb_004157_100 0.0952532166 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
5 Hb_000146_040 0.0984421936 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
6 Hb_001191_110 0.0986428912 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
7 Hb_000696_010 0.0994891866 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
8 Hb_009049_020 0.1054085783 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
9 Hb_001500_110 0.1059261157 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000107_230 0.1076717695 - - unknown [Medicago truncatula]
11 Hb_169631_010 0.1078065522 - - MADS-box transcription factor, putative [Ricinus communis]
12 Hb_002660_150 0.1082092022 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
13 Hb_001018_110 0.108801667 - - unnamed protein product [Coffea canephora]
14 Hb_004102_170 0.1097528846 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
15 Hb_086639_080 0.110431927 - - conserved hypothetical protein [Ricinus communis]
16 Hb_159809_030 0.1108530971 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
17 Hb_001269_330 0.1116044696 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
18 Hb_001018_130 0.1122908529 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
19 Hb_000172_510 0.1135124264 - - hypothetical protein B456_007G243100 [Gossypium raimondii]
20 Hb_005797_010 0.1154701808 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000107_080 Hb_000107_080 Hb_000331_370 Hb_000331_370 Hb_000107_080--Hb_000331_370 Hb_000890_230 Hb_000890_230 Hb_000107_080--Hb_000890_230 Hb_004157_100 Hb_004157_100 Hb_000107_080--Hb_004157_100 Hb_000146_040 Hb_000146_040 Hb_000107_080--Hb_000146_040 Hb_001191_110 Hb_001191_110 Hb_000107_080--Hb_001191_110 Hb_000696_010 Hb_000696_010 Hb_000107_080--Hb_000696_010 Hb_000002_480 Hb_000002_480 Hb_000331_370--Hb_000002_480 Hb_086639_080 Hb_086639_080 Hb_000331_370--Hb_086639_080 Hb_000331_370--Hb_000890_230 Hb_002660_150 Hb_002660_150 Hb_000331_370--Hb_002660_150 Hb_000028_600 Hb_000028_600 Hb_000331_370--Hb_000028_600 Hb_008406_180 Hb_008406_180 Hb_000890_230--Hb_008406_180 Hb_000890_230--Hb_086639_080 Hb_000890_230--Hb_000002_480 Hb_012651_010 Hb_012651_010 Hb_000890_230--Hb_012651_010 Hb_000107_230 Hb_000107_230 Hb_004157_100--Hb_000107_230 Hb_054745_010 Hb_054745_010 Hb_004157_100--Hb_054745_010 Hb_169631_010 Hb_169631_010 Hb_004157_100--Hb_169631_010 Hb_000676_080 Hb_000676_080 Hb_004157_100--Hb_000676_080 Hb_000004_020 Hb_000004_020 Hb_004157_100--Hb_000004_020 Hb_000022_020 Hb_000022_020 Hb_004157_100--Hb_000022_020 Hb_000140_350 Hb_000140_350 Hb_000146_040--Hb_000140_350 Hb_033286_010 Hb_033286_010 Hb_000146_040--Hb_033286_010 Hb_004102_170 Hb_004102_170 Hb_000146_040--Hb_004102_170 Hb_000477_100 Hb_000477_100 Hb_000146_040--Hb_000477_100 Hb_007481_010 Hb_007481_010 Hb_000146_040--Hb_007481_010 Hb_005797_010 Hb_005797_010 Hb_000146_040--Hb_005797_010 Hb_001191_110--Hb_000696_010 Hb_003671_010 Hb_003671_010 Hb_001191_110--Hb_003671_010 Hb_002375_040 Hb_002375_040 Hb_001191_110--Hb_002375_040 Hb_001191_110--Hb_000146_040 Hb_000594_050 Hb_000594_050 Hb_001191_110--Hb_000594_050 Hb_000696_010--Hb_003671_010 Hb_000696_010--Hb_000146_040 Hb_000696_010--Hb_002375_040 Hb_000696_010--Hb_005797_010 Hb_000696_010--Hb_033286_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.2727 31.5126 52.547 155.37 49.4454 94.4884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.7814 35.3165 47.4965 47.5438 52.3006

CAGE analysis