Hb_002375_040

Information

Type -
Description -
Location Contig2375: 54680-61078
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12540g
description POPTRDRAFT_665871; hypothetical protein
nr
ID XP_012065054.1
description PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
swissprot
ID A8YXY3
description 15 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 SV=2
trembl
ID A0A067LJ32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05711 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24940: 54730-61078 , PASA_asmbl_24941: 54755-59283
cDNA
(Sanger)
(ID:Location)		 036_M11.ab1: 54735-61029 , 046_M07.ab1: 54732-61077

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002375_040 0.0 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
2 Hb_003671_010 0.0879419904 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
3 Hb_000696_010 0.0890186441 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
4 Hb_001191_110 0.0897488472 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
5 Hb_001205_250 0.0971342328 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
6 Hb_003964_070 0.1005181825 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
7 Hb_000594_050 0.1010064219 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
8 Hb_001188_070 0.1019435647 - - PREDICTED: protein disulfide-isomerase 5-1 [Jatropha curcas]
9 Hb_001188_060 0.1029869301 - - -
10 Hb_001227_130 0.1032203562 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
11 Hb_002053_140 0.1043463992 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
12 Hb_009049_020 0.1052171769 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
13 Hb_001633_130 0.1052823145 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
14 Hb_002783_170 0.1055054611 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
15 Hb_017700_010 0.1057599518 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
16 Hb_003528_030 0.1074962601 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
17 Hb_001699_100 0.1085458584 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
18 Hb_182782_010 0.1087626227 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_054745_010 0.1102713207 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000260_330 0.1103074308 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]

Gene co-expression network

sample Hb_002375_040 Hb_002375_040 Hb_003671_010 Hb_003671_010 Hb_002375_040--Hb_003671_010 Hb_000696_010 Hb_000696_010 Hb_002375_040--Hb_000696_010 Hb_001191_110 Hb_001191_110 Hb_002375_040--Hb_001191_110 Hb_001205_250 Hb_001205_250 Hb_002375_040--Hb_001205_250 Hb_003964_070 Hb_003964_070 Hb_002375_040--Hb_003964_070 Hb_000594_050 Hb_000594_050 Hb_002375_040--Hb_000594_050 Hb_033286_010 Hb_033286_010 Hb_003671_010--Hb_033286_010 Hb_003683_020 Hb_003683_020 Hb_003671_010--Hb_003683_020 Hb_003671_010--Hb_000696_010 Hb_002785_050 Hb_002785_050 Hb_003671_010--Hb_002785_050 Hb_000260_330 Hb_000260_330 Hb_003671_010--Hb_000260_330 Hb_001882_050 Hb_001882_050 Hb_003671_010--Hb_001882_050 Hb_000696_010--Hb_001191_110 Hb_000146_040 Hb_000146_040 Hb_000696_010--Hb_000146_040 Hb_005797_010 Hb_005797_010 Hb_000696_010--Hb_005797_010 Hb_000696_010--Hb_033286_010 Hb_001191_110--Hb_003671_010 Hb_000107_080 Hb_000107_080 Hb_001191_110--Hb_000107_080 Hb_001191_110--Hb_000146_040 Hb_001191_110--Hb_000594_050 Hb_001584_140 Hb_001584_140 Hb_001205_250--Hb_001584_140 Hb_001188_060 Hb_001188_060 Hb_001205_250--Hb_001188_060 Hb_000637_150 Hb_000637_150 Hb_001205_250--Hb_000637_150 Hb_001188_070 Hb_001188_070 Hb_001205_250--Hb_001188_070 Hb_000915_260 Hb_000915_260 Hb_001205_250--Hb_000915_260 Hb_017700_010 Hb_017700_010 Hb_001205_250--Hb_017700_010 Hb_003665_060 Hb_003665_060 Hb_003964_070--Hb_003665_060 Hb_007317_110 Hb_007317_110 Hb_003964_070--Hb_007317_110 Hb_000120_670 Hb_000120_670 Hb_003964_070--Hb_000120_670 Hb_001357_350 Hb_001357_350 Hb_003964_070--Hb_001357_350 Hb_000345_240 Hb_000345_240 Hb_003964_070--Hb_000345_240 Hb_010381_090 Hb_010381_090 Hb_003964_070--Hb_010381_090 Hb_000181_130 Hb_000181_130 Hb_000594_050--Hb_000181_130 Hb_003750_050 Hb_003750_050 Hb_000594_050--Hb_003750_050 Hb_000107_230 Hb_000107_230 Hb_000594_050--Hb_000107_230 Hb_006588_170 Hb_006588_170 Hb_000594_050--Hb_006588_170 Hb_002811_180 Hb_002811_180 Hb_000594_050--Hb_002811_180 Hb_002641_060 Hb_002641_060 Hb_000594_050--Hb_002641_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3432 6.01766 20.7868 30.3651 23.0352 28.6605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5368 16.8161 16.8857 20.0533 11.54

CAGE analysis