Hb_000028_600

Information

Type -
Description -
Location Contig28: 602685-604352
Sequence    

Annotation

kegg
ID rcu:RCOM_0583070
description glutaredoxin-1, grx1, putative
nr
ID XP_002527695.1
description glutaredoxin-1, grx1, putative [Ricinus communis]
swissprot
ID Q8LFQ6
description Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2
trembl
ID B9SNX6
description Glutaredoxin-1, grx1, putative OS=Ricinus communis GN=RCOM_0583070 PE=4 SV=1
Gene Ontology
ID GO:0005773
description glutaredoxin-c4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29244: 602715-604364
cDNA
(Sanger)
(ID:Location)		 021_K19.ab1: 602715-604306 , 023_F12.ab1: 602743-604105 , 051_I23.ab1: 602724-604302

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_600 0.0 - - glutaredoxin-1, grx1, putative [Ricinus communis]
2 Hb_003988_050 0.0902224374 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
3 Hb_000331_370 0.0968254899 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
4 Hb_000115_150 0.0988032043 - - PREDICTED: IST1 homolog [Jatropha curcas]
5 Hb_000429_050 0.106491415 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
6 Hb_002490_010 0.112004263 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
7 Hb_002150_040 0.114571782 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
8 Hb_002902_130 0.1154025861 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
9 Hb_000258_240 0.1157136152 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
10 Hb_000002_480 0.1163719037 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
11 Hb_012651_010 0.1167232714 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
12 Hb_004525_040 0.1169624371 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
13 Hb_001842_010 0.1173238988 - - serine/threonine protein kinase, putative [Ricinus communis]
14 Hb_086639_080 0.1177054894 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003052_180 0.1182063943 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
16 Hb_003998_040 0.1187019981 - - organic anion transporter, putative [Ricinus communis]
17 Hb_005797_010 0.1191188072 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
18 Hb_001481_150 0.1194630464 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
19 Hb_001014_210 0.1204834269 - - CYP51 [Hevea brasiliensis]
20 Hb_000136_100 0.1206644162 - - PREDICTED: syntaxin-61 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_600 Hb_000028_600 Hb_003988_050 Hb_003988_050 Hb_000028_600--Hb_003988_050 Hb_000331_370 Hb_000331_370 Hb_000028_600--Hb_000331_370 Hb_000115_150 Hb_000115_150 Hb_000028_600--Hb_000115_150 Hb_000429_050 Hb_000429_050 Hb_000028_600--Hb_000429_050 Hb_002490_010 Hb_002490_010 Hb_000028_600--Hb_002490_010 Hb_002150_040 Hb_002150_040 Hb_000028_600--Hb_002150_040 Hb_003988_050--Hb_000115_150 Hb_000165_080 Hb_000165_080 Hb_003988_050--Hb_000165_080 Hb_002902_130 Hb_002902_130 Hb_003988_050--Hb_002902_130 Hb_001633_080 Hb_001633_080 Hb_003988_050--Hb_001633_080 Hb_000258_240 Hb_000258_240 Hb_003988_050--Hb_000258_240 Hb_000025_190 Hb_000025_190 Hb_003988_050--Hb_000025_190 Hb_000107_080 Hb_000107_080 Hb_000331_370--Hb_000107_080 Hb_000002_480 Hb_000002_480 Hb_000331_370--Hb_000002_480 Hb_086639_080 Hb_086639_080 Hb_000331_370--Hb_086639_080 Hb_000890_230 Hb_000890_230 Hb_000331_370--Hb_000890_230 Hb_002660_150 Hb_002660_150 Hb_000331_370--Hb_002660_150 Hb_000120_370 Hb_000120_370 Hb_000115_150--Hb_000120_370 Hb_062537_010 Hb_062537_010 Hb_000115_150--Hb_062537_010 Hb_001104_100 Hb_001104_100 Hb_000115_150--Hb_001104_100 Hb_005648_010 Hb_005648_010 Hb_000115_150--Hb_005648_010 Hb_000115_150--Hb_000025_190 Hb_000359_090 Hb_000359_090 Hb_000429_050--Hb_000359_090 Hb_012651_010 Hb_012651_010 Hb_000429_050--Hb_012651_010 Hb_002781_030 Hb_002781_030 Hb_000429_050--Hb_002781_030 Hb_001014_210 Hb_001014_210 Hb_000429_050--Hb_001014_210 Hb_000429_050--Hb_000258_240 Hb_002490_010--Hb_003988_050 Hb_002490_010--Hb_002150_040 Hb_010810_010 Hb_010810_010 Hb_002490_010--Hb_010810_010 Hb_000136_100 Hb_000136_100 Hb_002490_010--Hb_000136_100 Hb_002490_010--Hb_001104_100 Hb_000159_090 Hb_000159_090 Hb_002150_040--Hb_000159_090 Hb_000140_280 Hb_000140_280 Hb_002150_040--Hb_000140_280 Hb_005218_020 Hb_005218_020 Hb_002150_040--Hb_005218_020 Hb_000069_210 Hb_000069_210 Hb_002150_040--Hb_000069_210 Hb_086085_020 Hb_086085_020 Hb_002150_040--Hb_086085_020 Hb_002150_040--Hb_000136_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.2131 48.0216 79.0612 275.229 72.4673 73.1669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
122.148 56.7834 58.8391 134.068 90.8075

CAGE analysis