Hb_002660_150

Information

Type -
Description -
Location Contig2660: 130428-131801
Sequence    

Annotation

kegg
ID rcu:RCOM_1356410
description hypothetical protein
nr
ID XP_012082345.1
description PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S0M5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1356410 PE=4 SV=1
Gene Ontology
ID GO:0008168
description PREDICTED: uncharacterized protein LOC105642207 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 010_H08.ab1: 131712-132305

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002660_150 0.0 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
2 Hb_000331_370 0.0929483335 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
3 Hb_052805_010 0.0954282497 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
4 Hb_169631_010 0.0975819877 - - MADS-box transcription factor, putative [Ricinus communis]
5 Hb_000172_510 0.0999463386 - - hypothetical protein B456_007G243100 [Gossypium raimondii]
6 Hb_004032_030 0.1033884069 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
7 Hb_010407_140 0.1060326695 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
8 Hb_000107_080 0.1082092022 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
9 Hb_045770_010 0.1098319221 - - ER lumen protein retaining receptor [Populus trichocarpa]
10 Hb_005695_120 0.1119188525 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
11 Hb_011282_060 0.1152987523 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
12 Hb_003929_270 0.1164366102 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
13 Hb_001269_330 0.1169780809 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
14 Hb_004157_100 0.1177559028 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
15 Hb_005797_010 0.1191928115 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
16 Hb_004970_140 0.1196340151 - - PREDICTED: uncharacterized protein LOC105633635 [Jatropha curcas]
17 Hb_008970_030 0.1210577987 - - arf gtpase-activating protein, putative [Ricinus communis]
18 Hb_001087_030 0.1218824842 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
19 Hb_003929_170 0.1224617006 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
20 Hb_000107_230 0.1225537211 - - unknown [Medicago truncatula]

Gene co-expression network

sample Hb_002660_150 Hb_002660_150 Hb_000331_370 Hb_000331_370 Hb_002660_150--Hb_000331_370 Hb_052805_010 Hb_052805_010 Hb_002660_150--Hb_052805_010 Hb_169631_010 Hb_169631_010 Hb_002660_150--Hb_169631_010 Hb_000172_510 Hb_000172_510 Hb_002660_150--Hb_000172_510 Hb_004032_030 Hb_004032_030 Hb_002660_150--Hb_004032_030 Hb_010407_140 Hb_010407_140 Hb_002660_150--Hb_010407_140 Hb_000107_080 Hb_000107_080 Hb_000331_370--Hb_000107_080 Hb_000002_480 Hb_000002_480 Hb_000331_370--Hb_000002_480 Hb_086639_080 Hb_086639_080 Hb_000331_370--Hb_086639_080 Hb_000890_230 Hb_000890_230 Hb_000331_370--Hb_000890_230 Hb_000028_600 Hb_000028_600 Hb_000331_370--Hb_000028_600 Hb_000720_040 Hb_000720_040 Hb_052805_010--Hb_000720_040 Hb_011282_060 Hb_011282_060 Hb_052805_010--Hb_011282_060 Hb_001366_370 Hb_001366_370 Hb_052805_010--Hb_001366_370 Hb_000510_300 Hb_000510_300 Hb_052805_010--Hb_000510_300 Hb_000666_100 Hb_000666_100 Hb_052805_010--Hb_000666_100 Hb_000783_010 Hb_000783_010 Hb_052805_010--Hb_000783_010 Hb_004157_100 Hb_004157_100 Hb_169631_010--Hb_004157_100 Hb_000249_070 Hb_000249_070 Hb_169631_010--Hb_000249_070 Hb_000107_230 Hb_000107_230 Hb_169631_010--Hb_000107_230 Hb_004052_040 Hb_004052_040 Hb_169631_010--Hb_004052_040 Hb_009049_020 Hb_009049_020 Hb_169631_010--Hb_009049_020 Hb_001252_090 Hb_001252_090 Hb_000172_510--Hb_001252_090 Hb_000172_510--Hb_000331_370 Hb_000146_040 Hb_000146_040 Hb_000172_510--Hb_000146_040 Hb_000172_510--Hb_000107_080 Hb_000035_200 Hb_000035_200 Hb_000172_510--Hb_000035_200 Hb_002298_030 Hb_002298_030 Hb_004032_030--Hb_002298_030 Hb_005054_080 Hb_005054_080 Hb_004032_030--Hb_005054_080 Hb_005695_120 Hb_005695_120 Hb_004032_030--Hb_005695_120 Hb_000417_100 Hb_000417_100 Hb_004032_030--Hb_000417_100 Hb_000392_340 Hb_000392_340 Hb_004032_030--Hb_000392_340 Hb_003929_270 Hb_003929_270 Hb_004032_030--Hb_003929_270 Hb_007894_010 Hb_007894_010 Hb_010407_140--Hb_007894_010 Hb_001633_080 Hb_001633_080 Hb_010407_140--Hb_001633_080 Hb_000197_020 Hb_000197_020 Hb_010407_140--Hb_000197_020 Hb_006570_160 Hb_006570_160 Hb_010407_140--Hb_006570_160 Hb_000127_140 Hb_000127_140 Hb_010407_140--Hb_000127_140 Hb_010407_140--Hb_011282_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1667 5.31825 14.2044 27.3278 6.02126 13.1589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1029 6.9626 10.8454 11.2179 6.51801

CAGE analysis