Hb_000417_100

Information

Type -
Description -
Location Contig417: 73785-75221
Sequence    

Annotation

kegg
ID tcc:TCM_029677
description CBL-interacting protein kinase 12 isoform 1
nr
ID XP_012091790.1
description PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
swissprot
ID Q9SN43
description CBL-interacting serine/threonine-protein kinase 12 OS=Arabidopsis thaliana GN=CIPK12 PE=1 SV=1
trembl
ID A0A067JNN0
description Non-specific serine/threonine protein kinase OS=Jatropha curcas GN=JCGZ_21580 PE=4 SV=1
Gene Ontology
ID GO:0005886
description cbl-interacting serine threonine-protein kinase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41229: 73877-75270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_100 0.0 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
2 Hb_004032_030 0.1001563842 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
3 Hb_111985_110 0.1056790251 - - thioredoxin H-type 3 [Hevea brasiliensis]
4 Hb_000359_090 0.112675183 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
5 Hb_000136_100 0.1139129386 - - PREDICTED: syntaxin-61 [Jatropha curcas]
6 Hb_021409_080 0.1145377593 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
7 Hb_000521_130 0.1223922555 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
8 Hb_076233_040 0.123637168 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
9 Hb_000212_450 0.1278464635 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
10 Hb_000060_050 0.1297608479 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
11 Hb_000482_020 0.1313892538 - - cell wall invertase [Manihot esculenta]
12 Hb_001269_190 0.1328118539 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
13 Hb_008245_010 0.1350588845 - - PREDICTED: protein NEDD1 [Jatropha curcas]
14 Hb_002631_010 0.136775188 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
15 Hb_180343_010 0.1378472942 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
16 Hb_004627_030 0.137957351 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
17 Hb_001489_110 0.1389627823 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
18 Hb_066842_010 0.1393383795 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
19 Hb_003126_070 0.1393518786 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
20 Hb_004800_100 0.1399189916 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000417_100 Hb_000417_100 Hb_004032_030 Hb_004032_030 Hb_000417_100--Hb_004032_030 Hb_111985_110 Hb_111985_110 Hb_000417_100--Hb_111985_110 Hb_000359_090 Hb_000359_090 Hb_000417_100--Hb_000359_090 Hb_000136_100 Hb_000136_100 Hb_000417_100--Hb_000136_100 Hb_021409_080 Hb_021409_080 Hb_000417_100--Hb_021409_080 Hb_000521_130 Hb_000521_130 Hb_000417_100--Hb_000521_130 Hb_002298_030 Hb_002298_030 Hb_004032_030--Hb_002298_030 Hb_005054_080 Hb_005054_080 Hb_004032_030--Hb_005054_080 Hb_005695_120 Hb_005695_120 Hb_004032_030--Hb_005695_120 Hb_000392_340 Hb_000392_340 Hb_004032_030--Hb_000392_340 Hb_003929_270 Hb_003929_270 Hb_004032_030--Hb_003929_270 Hb_111985_110--Hb_021409_080 Hb_000407_070 Hb_000407_070 Hb_111985_110--Hb_000407_070 Hb_004627_030 Hb_004627_030 Hb_111985_110--Hb_004627_030 Hb_012305_130 Hb_012305_130 Hb_111985_110--Hb_012305_130 Hb_006573_290 Hb_006573_290 Hb_111985_110--Hb_006573_290 Hb_000429_050 Hb_000429_050 Hb_000359_090--Hb_000429_050 Hb_000258_240 Hb_000258_240 Hb_000359_090--Hb_000258_240 Hb_002781_030 Hb_002781_030 Hb_000359_090--Hb_002781_030 Hb_000384_070 Hb_000384_070 Hb_000359_090--Hb_000384_070 Hb_002133_020 Hb_002133_020 Hb_000359_090--Hb_002133_020 Hb_000359_090--Hb_004032_030 Hb_066842_010 Hb_066842_010 Hb_000136_100--Hb_066842_010 Hb_007894_010 Hb_007894_010 Hb_000136_100--Hb_007894_010 Hb_000060_050 Hb_000060_050 Hb_000136_100--Hb_000060_050 Hb_000136_100--Hb_000258_240 Hb_062537_010 Hb_062537_010 Hb_000136_100--Hb_062537_010 Hb_002150_040 Hb_002150_040 Hb_000136_100--Hb_002150_040 Hb_021409_080--Hb_012305_130 Hb_021409_080--Hb_004627_030 Hb_180343_010 Hb_180343_010 Hb_021409_080--Hb_180343_010 Hb_002110_100 Hb_002110_100 Hb_021409_080--Hb_002110_100 Hb_000110_120 Hb_000110_120 Hb_021409_080--Hb_000110_120 Hb_000212_450 Hb_000212_450 Hb_000521_130--Hb_000212_450 Hb_000252_100 Hb_000252_100 Hb_000521_130--Hb_000252_100 Hb_000140_380 Hb_000140_380 Hb_000521_130--Hb_000140_380 Hb_004800_100 Hb_004800_100 Hb_000521_130--Hb_004800_100 Hb_017131_010 Hb_017131_010 Hb_000521_130--Hb_017131_010 Hb_000173_410 Hb_000173_410 Hb_000521_130--Hb_000173_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.21815 4.04476 5.02298 20.7255 2.21611 5.47638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3733 7.77074 10.8949 6.45477 6.41526

CAGE analysis