Hb_007894_010

Information

Type -
Description -
Location Contig7894: 23435-27655
Sequence    

Annotation

kegg
ID rcu:RCOM_0082390
description hypothetical protein
nr
ID XP_012070832.1
description PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
swissprot
ID Q9H6D7
description HAUS augmin-like complex subunit 4 OS=Homo sapiens GN=HAUS4 PE=1 SV=1
trembl
ID A0A067L4X6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00891 PE=4 SV=1
Gene Ontology
ID GO:0005876
description haus augmin-like complex subunit 4 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58248: 23555-27606 , PASA_asmbl_58249: 22870-27448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_010 0.0 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
2 Hb_010407_140 0.0594120741 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
3 Hb_000127_140 0.07027183 - - transporter-related family protein [Populus trichocarpa]
4 Hb_005701_120 0.0869355048 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
5 Hb_000197_020 0.089223174 - - PREDICTED: protein RER1A [Jatropha curcas]
6 Hb_000136_100 0.0964012543 - - PREDICTED: syntaxin-61 [Jatropha curcas]
7 Hb_001957_010 0.0964103195 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
8 Hb_000244_170 0.0971995184 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
9 Hb_166574_010 0.0972480677 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
10 Hb_008147_090 0.0974400792 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000066_030 0.098658613 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
12 Hb_010368_050 0.1020860675 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
13 Hb_000402_130 0.103740316 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
14 Hb_019181_030 0.1042915222 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
15 Hb_002110_100 0.1046807339 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
16 Hb_003994_030 0.1062526689 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
17 Hb_003998_040 0.1063311672 - - organic anion transporter, putative [Ricinus communis]
18 Hb_000721_030 0.1083344108 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
19 Hb_066842_010 0.1084364756 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
20 Hb_013394_050 0.1085622671 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_007894_010 Hb_007894_010 Hb_010407_140 Hb_010407_140 Hb_007894_010--Hb_010407_140 Hb_000127_140 Hb_000127_140 Hb_007894_010--Hb_000127_140 Hb_005701_120 Hb_005701_120 Hb_007894_010--Hb_005701_120 Hb_000197_020 Hb_000197_020 Hb_007894_010--Hb_000197_020 Hb_000136_100 Hb_000136_100 Hb_007894_010--Hb_000136_100 Hb_001957_010 Hb_001957_010 Hb_007894_010--Hb_001957_010 Hb_001633_080 Hb_001633_080 Hb_010407_140--Hb_001633_080 Hb_010407_140--Hb_000197_020 Hb_006570_160 Hb_006570_160 Hb_010407_140--Hb_006570_160 Hb_010407_140--Hb_000127_140 Hb_011282_060 Hb_011282_060 Hb_010407_140--Hb_011282_060 Hb_008147_090 Hb_008147_090 Hb_000127_140--Hb_008147_090 Hb_001951_130 Hb_001951_130 Hb_000127_140--Hb_001951_130 Hb_001195_060 Hb_001195_060 Hb_000127_140--Hb_001195_060 Hb_000666_100 Hb_000666_100 Hb_000127_140--Hb_000666_100 Hb_002184_090 Hb_002184_090 Hb_000127_140--Hb_002184_090 Hb_000402_130 Hb_000402_130 Hb_005701_120--Hb_000402_130 Hb_000800_090 Hb_000800_090 Hb_005701_120--Hb_000800_090 Hb_003988_050 Hb_003988_050 Hb_005701_120--Hb_003988_050 Hb_002110_100 Hb_002110_100 Hb_005701_120--Hb_002110_100 Hb_185830_060 Hb_185830_060 Hb_005701_120--Hb_185830_060 Hb_005701_120--Hb_001957_010 Hb_000066_030 Hb_000066_030 Hb_000197_020--Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_000197_020--Hb_003998_040 Hb_004055_120 Hb_004055_120 Hb_000197_020--Hb_004055_120 Hb_000705_230 Hb_000705_230 Hb_000197_020--Hb_000705_230 Hb_011214_160 Hb_011214_160 Hb_000197_020--Hb_011214_160 Hb_066842_010 Hb_066842_010 Hb_000136_100--Hb_066842_010 Hb_000060_050 Hb_000060_050 Hb_000136_100--Hb_000060_050 Hb_000258_240 Hb_000258_240 Hb_000136_100--Hb_000258_240 Hb_062537_010 Hb_062537_010 Hb_000136_100--Hb_062537_010 Hb_002150_040 Hb_002150_040 Hb_000136_100--Hb_002150_040 Hb_065968_010 Hb_065968_010 Hb_001957_010--Hb_065968_010 Hb_003605_020 Hb_003605_020 Hb_001957_010--Hb_003605_020 Hb_000197_190 Hb_000197_190 Hb_001957_010--Hb_000197_190 Hb_001507_120 Hb_001507_120 Hb_001957_010--Hb_001507_120 Hb_000395_280 Hb_000395_280 Hb_001957_010--Hb_000395_280 Hb_003994_030 Hb_003994_030 Hb_001957_010--Hb_003994_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.2399 2.7052 12.2378 21.3145 4.897 6.20187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.307 7.64182 9.11898 9.69626 9.03946

CAGE analysis