Hb_000402_130

Information

Type -
Description -
Location Contig402: 138080-142205
Sequence    

Annotation

kegg
ID pop:POPTR_0010s05470g
description POPTRDRAFT_726254; clathrin adaptor complexes medium subunit family protein
nr
ID XP_012085460.1
description PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
swissprot
ID O22715
description AP-1 complex subunit mu-2 OS=Arabidopsis thaliana GN=AP1M2 PE=1 SV=1
trembl
ID A0A067K318
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17798 PE=4 SV=1
Gene Ontology
ID GO:0030131
description ap-1 complex subunit mu-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39929: 140897-142094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_130 0.0 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
2 Hb_005701_120 0.0595931618 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
3 Hb_033152_070 0.0863886358 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
4 Hb_002110_100 0.0864910802 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
5 Hb_003207_020 0.0877831655 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
6 Hb_000060_050 0.0918611476 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
7 Hb_000025_190 0.0926168153 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
8 Hb_004158_020 0.0937973488 - - Rab1 [Hevea brasiliensis]
9 Hb_003305_040 0.0944824347 - - AP47/50p mRNA family protein [Populus trichocarpa]
10 Hb_000258_240 0.0946134766 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
11 Hb_001946_310 0.0977064547 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
12 Hb_000800_090 0.0996252298 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
13 Hb_003988_050 0.1021701272 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
14 Hb_032920_070 0.103284829 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
15 Hb_012305_130 0.1033577596 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
16 Hb_007894_010 0.103740316 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
17 Hb_005993_010 0.1052403229 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
18 Hb_000062_090 0.1057386336 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
19 Hb_003529_030 0.1065717902 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
20 Hb_000136_100 0.107672142 - - PREDICTED: syntaxin-61 [Jatropha curcas]

Gene co-expression network

sample Hb_000402_130 Hb_000402_130 Hb_005701_120 Hb_005701_120 Hb_000402_130--Hb_005701_120 Hb_033152_070 Hb_033152_070 Hb_000402_130--Hb_033152_070 Hb_002110_100 Hb_002110_100 Hb_000402_130--Hb_002110_100 Hb_003207_020 Hb_003207_020 Hb_000402_130--Hb_003207_020 Hb_000060_050 Hb_000060_050 Hb_000402_130--Hb_000060_050 Hb_000025_190 Hb_000025_190 Hb_000402_130--Hb_000025_190 Hb_000800_090 Hb_000800_090 Hb_005701_120--Hb_000800_090 Hb_003988_050 Hb_003988_050 Hb_005701_120--Hb_003988_050 Hb_005701_120--Hb_002110_100 Hb_185830_060 Hb_185830_060 Hb_005701_120--Hb_185830_060 Hb_001957_010 Hb_001957_010 Hb_005701_120--Hb_001957_010 Hb_010042_020 Hb_010042_020 Hb_033152_070--Hb_010042_020 Hb_033152_070--Hb_003207_020 Hb_000928_190 Hb_000928_190 Hb_033152_070--Hb_000928_190 Hb_004525_040 Hb_004525_040 Hb_033152_070--Hb_004525_040 Hb_003052_180 Hb_003052_180 Hb_033152_070--Hb_003052_180 Hb_032920_070 Hb_032920_070 Hb_002110_100--Hb_032920_070 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_002392_010 Hb_002392_010 Hb_002110_100--Hb_002392_010 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_001486_040 Hb_001486_040 Hb_003207_020--Hb_001486_040 Hb_003207_020--Hb_010042_020 Hb_003994_030 Hb_003994_030 Hb_003207_020--Hb_003994_030 Hb_003207_020--Hb_005701_120 Hb_000060_050--Hb_003305_040 Hb_001489_110 Hb_001489_110 Hb_000060_050--Hb_001489_110 Hb_002660_170 Hb_002660_170 Hb_000060_050--Hb_002660_170 Hb_000212_450 Hb_000212_450 Hb_000060_050--Hb_000212_450 Hb_000252_100 Hb_000252_100 Hb_000060_050--Hb_000252_100 Hb_000173_410 Hb_000173_410 Hb_000060_050--Hb_000173_410 Hb_062537_010 Hb_062537_010 Hb_000025_190--Hb_062537_010 Hb_000025_190--Hb_002660_170 Hb_004880_150 Hb_004880_150 Hb_000025_190--Hb_004880_150 Hb_005648_010 Hb_005648_010 Hb_000025_190--Hb_005648_010 Hb_000025_190--Hb_003988_050 Hb_000115_150 Hb_000115_150 Hb_000025_190--Hb_000115_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05789 2.6476 4.66867 13.8265 1.96011 2.55941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.59038 5.14892 5.113 6.20804 5.27461

CAGE analysis