Hb_001486_040

Information

Type -
Description -
Location Contig1486: 25997-29491
Sequence    

Annotation

kegg
ID rcu:RCOM_1121490
description hypothetical protein
nr
ID XP_012070444.1
description PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KU91
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02717 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12219: 26810-28580
cDNA
(Sanger)
(ID:Location)		 038_J23r.ab1: 24183-26307

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_040 0.0 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
2 Hb_185830_060 0.0716217133 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
3 Hb_003207_020 0.0736077659 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
4 Hb_010042_020 0.0869593331 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
5 Hb_033152_070 0.0975859206 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
6 Hb_002193_060 0.0980736172 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
7 Hb_002955_020 0.098838576 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
8 Hb_029920_060 0.1009192797 - - PREDICTED: UPF0554 protein-like isoform X2 [Jatropha curcas]
9 Hb_005993_010 0.1061241923 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
10 Hb_001619_060 0.1064154492 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
11 Hb_001301_280 0.1080643807 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000395_110 0.1114764153 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
13 Hb_000665_180 0.1120445918 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
14 Hb_048476_060 0.112068328 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
15 Hb_012707_040 0.1145807219 - - PREDICTED: probable inactive purple acid phosphatase 29 [Jatropha curcas]
16 Hb_004607_070 0.1151005752 - - integral membrane protein, putative [Ricinus communis]
17 Hb_007416_070 0.1157968348 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
18 Hb_005701_120 0.1158053115 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
19 Hb_000046_170 0.118608095 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
20 Hb_000860_060 0.1192511836 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_001486_040 Hb_001486_040 Hb_185830_060 Hb_185830_060 Hb_001486_040--Hb_185830_060 Hb_003207_020 Hb_003207_020 Hb_001486_040--Hb_003207_020 Hb_010042_020 Hb_010042_020 Hb_001486_040--Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_001486_040--Hb_033152_070 Hb_002193_060 Hb_002193_060 Hb_001486_040--Hb_002193_060 Hb_002955_020 Hb_002955_020 Hb_001486_040--Hb_002955_020 Hb_185830_060--Hb_002193_060 Hb_000395_110 Hb_000395_110 Hb_185830_060--Hb_000395_110 Hb_005993_010 Hb_005993_010 Hb_185830_060--Hb_005993_010 Hb_000665_180 Hb_000665_180 Hb_185830_060--Hb_000665_180 Hb_005701_120 Hb_005701_120 Hb_185830_060--Hb_005701_120 Hb_003207_020--Hb_033152_070 Hb_003207_020--Hb_010042_020 Hb_003994_030 Hb_003994_030 Hb_003207_020--Hb_003994_030 Hb_000402_130 Hb_000402_130 Hb_003207_020--Hb_000402_130 Hb_003207_020--Hb_005701_120 Hb_010042_020--Hb_033152_070 Hb_000928_190 Hb_000928_190 Hb_010042_020--Hb_000928_190 Hb_004525_040 Hb_004525_040 Hb_010042_020--Hb_004525_040 Hb_000107_110 Hb_000107_110 Hb_010042_020--Hb_000107_110 Hb_033152_070--Hb_000928_190 Hb_033152_070--Hb_004525_040 Hb_003052_180 Hb_003052_180 Hb_033152_070--Hb_003052_180 Hb_033152_070--Hb_000402_130 Hb_000375_300 Hb_000375_300 Hb_002193_060--Hb_000375_300 Hb_002193_060--Hb_000395_110 Hb_018845_010 Hb_018845_010 Hb_002193_060--Hb_018845_010 Hb_000007_090 Hb_000007_090 Hb_002193_060--Hb_000007_090 Hb_007416_070 Hb_007416_070 Hb_002193_060--Hb_007416_070 Hb_000920_310 Hb_000920_310 Hb_002955_020--Hb_000920_310 Hb_002955_020--Hb_000665_180 Hb_000860_060 Hb_000860_060 Hb_002955_020--Hb_000860_060 Hb_000049_160 Hb_000049_160 Hb_002955_020--Hb_000049_160 Hb_000638_070 Hb_000638_070 Hb_002955_020--Hb_000638_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.18951 7.52586 11.4995 32.202 2.32742 5.21331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.99232 8.8591 5.48752 11.7129 18.3797

CAGE analysis