Hb_002955_020

Information

Type -
Description -
Location Contig2955: 49620-53318
Sequence    

Annotation

kegg
ID rcu:RCOM_1027630
description hypothetical protein
nr
ID XP_012077665.1
description PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
swissprot
ID F4I111
description Calcium uniporter protein 6, mitochondrial OS=Arabidopsis thaliana GN=At1g09575 PE=2 SV=1
trembl
ID A0A067LML8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17266 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 010_A05.ab1: 52061-52711 , 013_L10.ab1: 51973-52711

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002955_020 0.0 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
2 Hb_000920_310 0.0741278731 - - Ran GTPase binding protein, putative [Ricinus communis]
3 Hb_000665_180 0.0851545822 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
4 Hb_000860_060 0.0893331042 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
5 Hb_000049_160 0.0960798215 - - tyrosine decarboxylase family protein [Populus trichocarpa]
6 Hb_001486_040 0.098838576 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
7 Hb_000638_070 0.1000780972 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
8 Hb_000008_340 0.1003845722 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
9 Hb_000417_390 0.1018376584 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
10 Hb_001619_060 0.1059769238 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
11 Hb_000585_110 0.107541136 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
12 Hb_185830_060 0.1131702633 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
13 Hb_001080_300 0.1138222269 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
14 Hb_003875_030 0.1155330464 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
15 Hb_003207_020 0.1181122798 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
16 Hb_000395_110 0.1206101413 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
17 Hb_000684_390 0.1211135618 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
18 Hb_042083_040 0.1218973065 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004631_090 0.1227308388 - - PREDICTED: probable glucan 1,3-beta-glucosidase A [Jatropha curcas]
20 Hb_000049_180 0.1230129357 - - aromatic amino acid decarboxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002955_020 Hb_002955_020 Hb_000920_310 Hb_000920_310 Hb_002955_020--Hb_000920_310 Hb_000665_180 Hb_000665_180 Hb_002955_020--Hb_000665_180 Hb_000860_060 Hb_000860_060 Hb_002955_020--Hb_000860_060 Hb_000049_160 Hb_000049_160 Hb_002955_020--Hb_000049_160 Hb_001486_040 Hb_001486_040 Hb_002955_020--Hb_001486_040 Hb_000638_070 Hb_000638_070 Hb_002955_020--Hb_000638_070 Hb_000684_390 Hb_000684_390 Hb_000920_310--Hb_000684_390 Hb_000920_310--Hb_000860_060 Hb_000417_390 Hb_000417_390 Hb_000920_310--Hb_000417_390 Hb_004306_110 Hb_004306_110 Hb_000920_310--Hb_004306_110 Hb_000000_310 Hb_000000_310 Hb_000920_310--Hb_000000_310 Hb_000008_340 Hb_000008_340 Hb_000665_180--Hb_000008_340 Hb_000395_110 Hb_000395_110 Hb_000665_180--Hb_000395_110 Hb_000665_180--Hb_000638_070 Hb_185830_060 Hb_185830_060 Hb_000665_180--Hb_185830_060 Hb_002193_060 Hb_002193_060 Hb_000665_180--Hb_002193_060 Hb_000860_060--Hb_000008_340 Hb_000342_170 Hb_000342_170 Hb_000860_060--Hb_000342_170 Hb_000320_340 Hb_000320_340 Hb_000860_060--Hb_000320_340 Hb_000390_190 Hb_000390_190 Hb_000860_060--Hb_000390_190 Hb_001619_060 Hb_001619_060 Hb_000049_160--Hb_001619_060 Hb_000049_180 Hb_000049_180 Hb_000049_160--Hb_000049_180 Hb_000096_190 Hb_000096_190 Hb_000049_160--Hb_000096_190 Hb_000049_160--Hb_000665_180 Hb_000049_160--Hb_000008_340 Hb_001486_040--Hb_185830_060 Hb_003207_020 Hb_003207_020 Hb_001486_040--Hb_003207_020 Hb_010042_020 Hb_010042_020 Hb_001486_040--Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_001486_040--Hb_033152_070 Hb_001486_040--Hb_002193_060 Hb_011486_060 Hb_011486_060 Hb_000638_070--Hb_011486_060 Hb_001976_030 Hb_001976_030 Hb_000638_070--Hb_001976_030 Hb_001663_040 Hb_001663_040 Hb_000638_070--Hb_001663_040 Hb_000638_070--Hb_000395_110 Hb_000638_070--Hb_000417_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.28722 2.78735 7.41718 15.5151 1.14619 4.43974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.24578 3.97731 3.60251 5.18478 13.5557

CAGE analysis