Hb_000096_190

Information

Type -
Description -
Location Contig96: 177329-184484
Sequence    

Annotation

kegg
ID cam:101490770
description ADP-ribosylation factor-like protein 8A-like
nr
ID AFK33949.1
description unknown [Lotus japonicus]
swissprot
ID Q5ZKQ8
description ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1
trembl
ID I3S107
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor-like protein 8a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63701: 183633-183946 , PASA_asmbl_63702: 177279-184423
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000096_190 0.0 - - unknown [Lotus japonicus]
2 Hb_000049_180 0.0926753629 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
3 Hb_002759_120 0.0931515463 - - conserved hypothetical protein [Ricinus communis]
4 Hb_042083_040 0.0946352894 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000049_160 0.0972675614 - - tyrosine decarboxylase family protein [Populus trichocarpa]
6 Hb_000962_070 0.1005122891 - - PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_002182_020 0.1023619787 - - Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_001976_030 0.1067478451 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
9 Hb_001369_100 0.1145563755 - - hypothetical protein JCGZ_26280 [Jatropha curcas]
10 Hb_001628_120 0.115195246 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
11 Hb_000638_070 0.1187184979 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
12 Hb_004306_110 0.1283772367 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
13 Hb_005563_010 0.1286606685 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
14 Hb_001789_200 0.1296749564 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
15 Hb_001619_060 0.1308358543 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
16 Hb_000086_210 0.1309053991 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_000139_300 0.1310182939 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
18 Hb_121089_040 0.1318742693 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
19 Hb_002053_010 0.1318797869 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
20 Hb_003642_010 0.1330780049 - - PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000096_190 Hb_000096_190 Hb_000049_180 Hb_000049_180 Hb_000096_190--Hb_000049_180 Hb_002759_120 Hb_002759_120 Hb_000096_190--Hb_002759_120 Hb_042083_040 Hb_042083_040 Hb_000096_190--Hb_042083_040 Hb_000049_160 Hb_000049_160 Hb_000096_190--Hb_000049_160 Hb_000962_070 Hb_000962_070 Hb_000096_190--Hb_000962_070 Hb_002182_020 Hb_002182_020 Hb_000096_190--Hb_002182_020 Hb_001976_030 Hb_001976_030 Hb_000049_180--Hb_001976_030 Hb_001628_120 Hb_001628_120 Hb_000049_180--Hb_001628_120 Hb_000049_180--Hb_000049_160 Hb_007441_310 Hb_007441_310 Hb_000049_180--Hb_007441_310 Hb_000049_180--Hb_042083_040 Hb_003752_090 Hb_003752_090 Hb_002759_120--Hb_003752_090 Hb_000566_010 Hb_000566_010 Hb_002759_120--Hb_000566_010 Hb_002759_120--Hb_042083_040 Hb_158092_100 Hb_158092_100 Hb_002759_120--Hb_158092_100 Hb_003994_080 Hb_003994_080 Hb_002759_120--Hb_003994_080 Hb_174865_040 Hb_174865_040 Hb_042083_040--Hb_174865_040 Hb_042083_040--Hb_001976_030 Hb_042083_040--Hb_001628_120 Hb_156850_100 Hb_156850_100 Hb_042083_040--Hb_156850_100 Hb_001619_060 Hb_001619_060 Hb_000049_160--Hb_001619_060 Hb_002955_020 Hb_002955_020 Hb_000049_160--Hb_002955_020 Hb_000665_180 Hb_000665_180 Hb_000049_160--Hb_000665_180 Hb_000008_340 Hb_000008_340 Hb_000049_160--Hb_000008_340 Hb_000962_070--Hb_042083_040 Hb_000796_150 Hb_000796_150 Hb_000962_070--Hb_000796_150 Hb_000638_070 Hb_000638_070 Hb_000962_070--Hb_000638_070 Hb_000181_350 Hb_000181_350 Hb_000962_070--Hb_000181_350 Hb_000057_110 Hb_000057_110 Hb_000962_070--Hb_000057_110 Hb_002182_020--Hb_002759_120 Hb_000749_020 Hb_000749_020 Hb_002182_020--Hb_000749_020 Hb_002182_020--Hb_000049_160 Hb_000086_210 Hb_000086_210 Hb_002182_020--Hb_000086_210 Hb_005563_010 Hb_005563_010 Hb_002182_020--Hb_005563_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.22944 3.97836 27.7327 39.7738 6.45794 7.83386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.21748 14.2927 6.6599 7.72393 39.948

CAGE analysis