Hb_000049_180

Information

Type -
Description -
Location Contig49: 145131-147462
Sequence    

Annotation

kegg
ID rcu:RCOM_0541470
description aromatic amino acid decarboxylase, putative (EC:4.1.1.28)
nr
ID XP_002526532.1
description aromatic amino acid decarboxylase, putative [Ricinus communis]
swissprot
ID Q8RY79
description Tyrosine decarboxylase 1 OS=Arabidopsis thaliana GN=ELI5 PE=2 SV=1
trembl
ID B9SKL3
description Aromatic amino acid decarboxylase, putative OS=Ricinus communis GN=RCOM_0541470 PE=3 SV=1
Gene Ontology
ID GO:0004058
description tyrosine decarboxylase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45263: 128209-147374 , PASA_asmbl_45265: 147541-147732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_180 0.0 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
2 Hb_001976_030 0.0477540273 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
3 Hb_001628_120 0.0871427482 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
4 Hb_000049_160 0.0883389881 - - tyrosine decarboxylase family protein [Populus trichocarpa]
5 Hb_007441_310 0.0908071258 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
6 Hb_000096_190 0.0926753629 - - unknown [Lotus japonicus]
7 Hb_042083_040 0.0936290059 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006829_060 0.0948175052 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
9 Hb_005563_010 0.0951468879 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
10 Hb_000057_110 0.1024521314 - - PREDICTED: kinesin-13A [Jatropha curcas]
11 Hb_000638_070 0.1056338988 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
12 Hb_121089_040 0.1072879986 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
13 Hb_097495_010 0.1083446208 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
14 Hb_002759_120 0.109505619 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000585_110 0.1096088765 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
16 Hb_000566_010 0.1113487872 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
17 Hb_000008_340 0.1128415675 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
18 Hb_008025_010 0.1134301389 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
19 Hb_005074_040 0.1152429546 - - ATP binding protein, putative [Ricinus communis]
20 Hb_001369_100 0.1158147127 - - hypothetical protein JCGZ_26280 [Jatropha curcas]

Gene co-expression network

sample Hb_000049_180 Hb_000049_180 Hb_001976_030 Hb_001976_030 Hb_000049_180--Hb_001976_030 Hb_001628_120 Hb_001628_120 Hb_000049_180--Hb_001628_120 Hb_000049_160 Hb_000049_160 Hb_000049_180--Hb_000049_160 Hb_007441_310 Hb_007441_310 Hb_000049_180--Hb_007441_310 Hb_000096_190 Hb_000096_190 Hb_000049_180--Hb_000096_190 Hb_042083_040 Hb_042083_040 Hb_000049_180--Hb_042083_040 Hb_001976_030--Hb_001628_120 Hb_001976_030--Hb_042083_040 Hb_006829_060 Hb_006829_060 Hb_001976_030--Hb_006829_060 Hb_005563_010 Hb_005563_010 Hb_001976_030--Hb_005563_010 Hb_000638_070 Hb_000638_070 Hb_001976_030--Hb_000638_070 Hb_000684_390 Hb_000684_390 Hb_001628_120--Hb_000684_390 Hb_001628_120--Hb_042083_040 Hb_001628_120--Hb_007441_310 Hb_000397_150 Hb_000397_150 Hb_001628_120--Hb_000397_150 Hb_001619_060 Hb_001619_060 Hb_000049_160--Hb_001619_060 Hb_002955_020 Hb_002955_020 Hb_000049_160--Hb_002955_020 Hb_000049_160--Hb_000096_190 Hb_000665_180 Hb_000665_180 Hb_000049_160--Hb_000665_180 Hb_000008_340 Hb_000008_340 Hb_000049_160--Hb_000008_340 Hb_008375_010 Hb_008375_010 Hb_007441_310--Hb_008375_010 Hb_032631_070 Hb_032631_070 Hb_007441_310--Hb_032631_070 Hb_000585_110 Hb_000585_110 Hb_007441_310--Hb_000585_110 Hb_007441_310--Hb_000397_150 Hb_055690_010 Hb_055690_010 Hb_007441_310--Hb_055690_010 Hb_001195_770 Hb_001195_770 Hb_007441_310--Hb_001195_770 Hb_002759_120 Hb_002759_120 Hb_000096_190--Hb_002759_120 Hb_000096_190--Hb_042083_040 Hb_000962_070 Hb_000962_070 Hb_000096_190--Hb_000962_070 Hb_002182_020 Hb_002182_020 Hb_000096_190--Hb_002182_020 Hb_174865_040 Hb_174865_040 Hb_042083_040--Hb_174865_040 Hb_156850_100 Hb_156850_100 Hb_042083_040--Hb_156850_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.20469 2.14272 16.805 19.5491 3.09586 3.25887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.53708 5.2456 5.31791 6.70735 22.2373

CAGE analysis