Hb_000049_160

Information

Type -
Description -
Location Contig49: 128239-133569
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25690g
description POPTRDRAFT_816969; tyrosine decarboxylase family protein
nr
ID XP_002301839.2
description tyrosine decarboxylase family protein [Populus trichocarpa]
swissprot
ID Q7XHL3
description Tyrosine decarboxylase 1 OS=Oryza sativa subsp. japonica GN=Os07g0437500 PE=2 SV=1
trembl
ID B9GRB9
description Tyrosine decarboxylase family protein OS=Populus trichocarpa GN=POPTR_0002s25690g PE=3 SV=2
Gene Ontology
ID GO:0004058
description tyrosine decarboxylase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45263: 128209-147374
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_160 0.0 - - tyrosine decarboxylase family protein [Populus trichocarpa]
2 Hb_001619_060 0.0880694231 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
3 Hb_000049_180 0.0883389881 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
4 Hb_002955_020 0.0960798215 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
5 Hb_000096_190 0.0972675614 - - unknown [Lotus japonicus]
6 Hb_000665_180 0.0979261919 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
7 Hb_000008_340 0.1023271168 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
8 Hb_003602_020 0.1068714878 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Jatropha curcas]
9 Hb_005074_040 0.1073506682 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000638_070 0.1075005335 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
11 Hb_001976_030 0.1081802319 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
12 Hb_000012_080 0.1118404488 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
13 Hb_000139_300 0.1119076931 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
14 Hb_002193_060 0.1151824275 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
15 Hb_000057_110 0.1170630744 - - PREDICTED: kinesin-13A [Jatropha curcas]
16 Hb_000110_060 0.1185905548 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
17 Hb_001486_040 0.1203577132 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
18 Hb_000935_040 0.1204166246 - - Uncharacterized protein isoform 2 [Theobroma cacao]
19 Hb_001369_630 0.1221966622 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
20 Hb_002007_320 0.1236860753 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]

Gene co-expression network

sample Hb_000049_160 Hb_000049_160 Hb_001619_060 Hb_001619_060 Hb_000049_160--Hb_001619_060 Hb_000049_180 Hb_000049_180 Hb_000049_160--Hb_000049_180 Hb_002955_020 Hb_002955_020 Hb_000049_160--Hb_002955_020 Hb_000096_190 Hb_000096_190 Hb_000049_160--Hb_000096_190 Hb_000665_180 Hb_000665_180 Hb_000049_160--Hb_000665_180 Hb_000008_340 Hb_000008_340 Hb_000049_160--Hb_000008_340 Hb_000375_300 Hb_000375_300 Hb_001619_060--Hb_000375_300 Hb_029920_060 Hb_029920_060 Hb_001619_060--Hb_029920_060 Hb_001301_280 Hb_001301_280 Hb_001619_060--Hb_001301_280 Hb_002193_060 Hb_002193_060 Hb_001619_060--Hb_002193_060 Hb_185830_060 Hb_185830_060 Hb_001619_060--Hb_185830_060 Hb_001976_030 Hb_001976_030 Hb_000049_180--Hb_001976_030 Hb_001628_120 Hb_001628_120 Hb_000049_180--Hb_001628_120 Hb_007441_310 Hb_007441_310 Hb_000049_180--Hb_007441_310 Hb_000049_180--Hb_000096_190 Hb_042083_040 Hb_042083_040 Hb_000049_180--Hb_042083_040 Hb_000920_310 Hb_000920_310 Hb_002955_020--Hb_000920_310 Hb_002955_020--Hb_000665_180 Hb_000860_060 Hb_000860_060 Hb_002955_020--Hb_000860_060 Hb_001486_040 Hb_001486_040 Hb_002955_020--Hb_001486_040 Hb_000638_070 Hb_000638_070 Hb_002955_020--Hb_000638_070 Hb_002759_120 Hb_002759_120 Hb_000096_190--Hb_002759_120 Hb_000096_190--Hb_042083_040 Hb_000962_070 Hb_000962_070 Hb_000096_190--Hb_000962_070 Hb_002182_020 Hb_002182_020 Hb_000096_190--Hb_002182_020 Hb_000665_180--Hb_000008_340 Hb_000395_110 Hb_000395_110 Hb_000665_180--Hb_000395_110 Hb_000665_180--Hb_000638_070 Hb_000665_180--Hb_185830_060 Hb_000665_180--Hb_002193_060 Hb_000008_340--Hb_000860_060 Hb_000585_110 Hb_000585_110 Hb_000008_340--Hb_000585_110 Hb_000007_090 Hb_000007_090 Hb_000008_340--Hb_000007_090 Hb_000008_340--Hb_002955_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.2355 4.09871 20.5574 36.5898 3.11383 4.59724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.20562 9.53545 6.71559 10.6251 26.8155

CAGE analysis