Hb_001619_060

Information

Type -
Description -
Location Contig1619: 65467-70251
Sequence    

Annotation

kegg
ID pop:POPTR_0002s09570g
description POPTRDRAFT_410213; hypothetical protein
nr
ID XP_012067850.1
description PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
swissprot
ID Q8LBV4
description Uncharacterized methyltransferase At1g78140, chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=2 SV=1
trembl
ID A0A067L2B7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15775 PE=4 SV=1
Gene Ontology
ID GO:0008168
description uncharacterized methyltransferase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14530: 65493-70237 , PASA_asmbl_14532: 69156-69281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001619_060 0.0 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
2 Hb_000375_300 0.080642852 - - PREDICTED: cyanate hydratase [Jatropha curcas]
3 Hb_000049_160 0.0880694231 - - tyrosine decarboxylase family protein [Populus trichocarpa]
4 Hb_029920_060 0.0933289214 - - PREDICTED: UPF0554 protein-like isoform X2 [Jatropha curcas]
5 Hb_001301_280 0.0962294284 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002193_060 0.0979467724 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
7 Hb_185830_060 0.0993197922 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
8 Hb_000585_110 0.0995889923 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
9 Hb_000007_090 0.1005707706 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
10 Hb_000570_020 0.1006588416 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
11 Hb_002615_030 0.1028736003 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
12 Hb_116349_120 0.1047554832 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_002955_020 0.1059769238 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
14 Hb_002007_320 0.1063472296 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
15 Hb_001486_040 0.1064154492 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
16 Hb_003371_070 0.1073650361 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
17 Hb_000665_180 0.1078631381 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
18 Hb_000008_340 0.10902171 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
19 Hb_003875_030 0.1092054759 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
20 Hb_000599_210 0.1105457836 - - serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001619_060 Hb_001619_060 Hb_000375_300 Hb_000375_300 Hb_001619_060--Hb_000375_300 Hb_000049_160 Hb_000049_160 Hb_001619_060--Hb_000049_160 Hb_029920_060 Hb_029920_060 Hb_001619_060--Hb_029920_060 Hb_001301_280 Hb_001301_280 Hb_001619_060--Hb_001301_280 Hb_002193_060 Hb_002193_060 Hb_001619_060--Hb_002193_060 Hb_185830_060 Hb_185830_060 Hb_001619_060--Hb_185830_060 Hb_000375_300--Hb_002193_060 Hb_018845_010 Hb_018845_010 Hb_000375_300--Hb_018845_010 Hb_000007_090 Hb_000007_090 Hb_000375_300--Hb_000007_090 Hb_116349_120 Hb_116349_120 Hb_000375_300--Hb_116349_120 Hb_008725_270 Hb_008725_270 Hb_000375_300--Hb_008725_270 Hb_000049_180 Hb_000049_180 Hb_000049_160--Hb_000049_180 Hb_002955_020 Hb_002955_020 Hb_000049_160--Hb_002955_020 Hb_000096_190 Hb_000096_190 Hb_000049_160--Hb_000096_190 Hb_000665_180 Hb_000665_180 Hb_000049_160--Hb_000665_180 Hb_000008_340 Hb_000008_340 Hb_000049_160--Hb_000008_340 Hb_001486_040 Hb_001486_040 Hb_029920_060--Hb_001486_040 Hb_029920_060--Hb_185830_060 Hb_029920_060--Hb_001301_280 Hb_000365_010 Hb_000365_010 Hb_029920_060--Hb_000365_010 Hb_020390_010 Hb_020390_010 Hb_029920_060--Hb_020390_010 Hb_002486_080 Hb_002486_080 Hb_001301_280--Hb_002486_080 Hb_001951_060 Hb_001951_060 Hb_001301_280--Hb_001951_060 Hb_001301_280--Hb_000365_010 Hb_011671_120 Hb_011671_120 Hb_001301_280--Hb_011671_120 Hb_007416_070 Hb_007416_070 Hb_001301_280--Hb_007416_070 Hb_002193_060--Hb_185830_060 Hb_000395_110 Hb_000395_110 Hb_002193_060--Hb_000395_110 Hb_002193_060--Hb_018845_010 Hb_002193_060--Hb_000007_090 Hb_002193_060--Hb_007416_070 Hb_185830_060--Hb_001486_040 Hb_185830_060--Hb_000395_110 Hb_005993_010 Hb_005993_010 Hb_185830_060--Hb_005993_010 Hb_185830_060--Hb_000665_180 Hb_005701_120 Hb_005701_120 Hb_185830_060--Hb_005701_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.5842 8.58199 17.5981 28.956 2.90142 4.22918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.70663 10.0773 6.19424 9.91495 23.4486

CAGE analysis