Hb_020390_010

Information

Type -
Description -
Location Contig20390: 10128-13120
Sequence    

Annotation

kegg
ID rcu:RCOM_1604370
description Alpha-expansin 13 precursor, putative
nr
ID XP_012074731.1
description PREDICTED: expansin-A13 [Jatropha curcas]
swissprot
ID Q9M9P0
description Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2
trembl
ID A0A067KHR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10508 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin-a13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020390_010 0.0 - - PREDICTED: expansin-A13 [Jatropha curcas]
2 Hb_032920_070 0.0587386497 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
3 Hb_005701_120 0.085599745 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
4 Hb_000288_020 0.0864463776 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002110_100 0.0881950569 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
6 Hb_006683_070 0.0916420374 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
7 Hb_000046_170 0.0938412521 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
8 Hb_004607_070 0.0967465282 - - integral membrane protein, putative [Ricinus communis]
9 Hb_185830_060 0.1005861803 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
10 Hb_000185_220 0.1013155402 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
11 Hb_003994_030 0.1016781036 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
12 Hb_002392_010 0.1048093156 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
13 Hb_000297_120 0.1048657104 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
14 Hb_015057_020 0.1054795067 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
15 Hb_005800_030 0.1071375746 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
16 Hb_170138_010 0.1076218134 - - conserved hypothetical protein [Ricinus communis]
17 Hb_066842_010 0.1082285512 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
18 Hb_001946_390 0.1083879764 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
19 Hb_001269_190 0.1086070472 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
20 Hb_000240_030 0.1091534338 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_020390_010 Hb_020390_010 Hb_032920_070 Hb_032920_070 Hb_020390_010--Hb_032920_070 Hb_005701_120 Hb_005701_120 Hb_020390_010--Hb_005701_120 Hb_000288_020 Hb_000288_020 Hb_020390_010--Hb_000288_020 Hb_002110_100 Hb_002110_100 Hb_020390_010--Hb_002110_100 Hb_006683_070 Hb_006683_070 Hb_020390_010--Hb_006683_070 Hb_000046_170 Hb_000046_170 Hb_020390_010--Hb_000046_170 Hb_032920_070--Hb_002110_100 Hb_000297_120 Hb_000297_120 Hb_032920_070--Hb_000297_120 Hb_002392_010 Hb_002392_010 Hb_032920_070--Hb_002392_010 Hb_015057_020 Hb_015057_020 Hb_032920_070--Hb_015057_020 Hb_000185_220 Hb_000185_220 Hb_032920_070--Hb_000185_220 Hb_000402_130 Hb_000402_130 Hb_005701_120--Hb_000402_130 Hb_000800_090 Hb_000800_090 Hb_005701_120--Hb_000800_090 Hb_003988_050 Hb_003988_050 Hb_005701_120--Hb_003988_050 Hb_005701_120--Hb_002110_100 Hb_185830_060 Hb_185830_060 Hb_005701_120--Hb_185830_060 Hb_001957_010 Hb_001957_010 Hb_005701_120--Hb_001957_010 Hb_000288_020--Hb_032920_070 Hb_002477_010 Hb_002477_010 Hb_000288_020--Hb_002477_010 Hb_004007_110 Hb_004007_110 Hb_000288_020--Hb_004007_110 Hb_000288_020--Hb_015057_020 Hb_000288_020--Hb_002110_100 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_002110_100--Hb_002392_010 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_185255_010 Hb_185255_010 Hb_006683_070--Hb_185255_010 Hb_015934_120 Hb_015934_120 Hb_006683_070--Hb_015934_120 Hb_006683_070--Hb_000297_120 Hb_001269_190 Hb_001269_190 Hb_006683_070--Hb_001269_190 Hb_025098_010 Hb_025098_010 Hb_006683_070--Hb_025098_010 Hb_005800_030 Hb_005800_030 Hb_006683_070--Hb_005800_030 Hb_000367_090 Hb_000367_090 Hb_000046_170--Hb_000367_090 Hb_004607_070 Hb_004607_070 Hb_000046_170--Hb_004607_070 Hb_000179_270 Hb_000179_270 Hb_000046_170--Hb_000179_270 Hb_028487_160 Hb_028487_160 Hb_000046_170--Hb_028487_160 Hb_000087_070 Hb_000087_070 Hb_000046_170--Hb_000087_070 Hb_000165_080 Hb_000165_080 Hb_000046_170--Hb_000165_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.60729 4.49526 8.90075 19.7038 5.35812 4.11339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.23755 10.47 6.09877 9.28104 14.0088

CAGE analysis