Hb_002392_010

Information

Type -
Description -
Location Contig2392: 8975-14926
Sequence    

Annotation

kegg
ID rcu:RCOM_0255500
description ap endonuclease, putative (EC:4.2.99.18)
nr
ID XP_012085941.1
description PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
swissprot
ID P45951
description DNA-(apurinic or apyrimidinic site) lyase, chloroplastic OS=Arabidopsis thaliana GN=ARP PE=1 SV=2
trembl
ID A0A067JQR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22448 PE=4 SV=1
Gene Ontology
ID GO:0004519
description apurinic endonuclease-redox protein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25079: 8324-10785 , PASA_asmbl_25080: 8549-8854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002392_010 0.0 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
2 Hb_001946_390 0.0697205183 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
3 Hb_032920_070 0.0758033215 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
4 Hb_002110_100 0.0760044128 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
5 Hb_000185_220 0.0778180079 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
6 Hb_066842_010 0.0799486605 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
7 Hb_005601_040 0.0822643081 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
8 Hb_005276_040 0.0876001064 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
9 Hb_001662_130 0.0878975029 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
10 Hb_004257_010 0.0885161648 - - CMP-sialic acid transporter, putative [Ricinus communis]
11 Hb_008147_090 0.0889043721 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001307_030 0.0889720619 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
13 Hb_003305_040 0.0890313584 - - AP47/50p mRNA family protein [Populus trichocarpa]
14 Hb_012244_010 0.0909545276 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
15 Hb_170138_010 0.0935513329 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007192_030 0.0939118076 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
17 Hb_000080_130 0.0948576751 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
18 Hb_000297_120 0.095014239 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
19 Hb_001663_040 0.0954118031 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
20 Hb_180343_010 0.0963393457 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002392_010 Hb_002392_010 Hb_001946_390 Hb_001946_390 Hb_002392_010--Hb_001946_390 Hb_032920_070 Hb_032920_070 Hb_002392_010--Hb_032920_070 Hb_002110_100 Hb_002110_100 Hb_002392_010--Hb_002110_100 Hb_000185_220 Hb_000185_220 Hb_002392_010--Hb_000185_220 Hb_066842_010 Hb_066842_010 Hb_002392_010--Hb_066842_010 Hb_005601_040 Hb_005601_040 Hb_002392_010--Hb_005601_040 Hb_012733_040 Hb_012733_040 Hb_001946_390--Hb_012733_040 Hb_004452_120 Hb_004452_120 Hb_001946_390--Hb_004452_120 Hb_001946_390--Hb_066842_010 Hb_000174_260 Hb_000174_260 Hb_001946_390--Hb_000174_260 Hb_000721_030 Hb_000721_030 Hb_001946_390--Hb_000721_030 Hb_020390_010 Hb_020390_010 Hb_032920_070--Hb_020390_010 Hb_032920_070--Hb_002110_100 Hb_000297_120 Hb_000297_120 Hb_032920_070--Hb_000297_120 Hb_015057_020 Hb_015057_020 Hb_032920_070--Hb_015057_020 Hb_032920_070--Hb_000185_220 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_005701_120 Hb_005701_120 Hb_002110_100--Hb_005701_120 Hb_006059_010 Hb_006059_010 Hb_000185_220--Hb_006059_010 Hb_001195_400 Hb_001195_400 Hb_000185_220--Hb_001195_400 Hb_003206_110 Hb_003206_110 Hb_000185_220--Hb_003206_110 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_001975_150 Hb_001975_150 Hb_000185_220--Hb_001975_150 Hb_000590_120 Hb_000590_120 Hb_066842_010--Hb_000590_120 Hb_001269_190 Hb_001269_190 Hb_066842_010--Hb_001269_190 Hb_066842_010--Hb_000185_220 Hb_000136_100 Hb_000136_100 Hb_066842_010--Hb_000136_100 Hb_001629_030 Hb_001629_030 Hb_005601_040--Hb_001629_030 Hb_005601_040--Hb_001195_400 Hb_001818_100 Hb_001818_100 Hb_005601_040--Hb_001818_100 Hb_005976_080 Hb_005976_080 Hb_005601_040--Hb_005976_080 Hb_005601_040--Hb_000185_220 Hb_005601_040--Hb_003305_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85289 1.74979 5.7623 8.33831 1.70914 3.08033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.91916 5.3688 5.41121 5.49265 7.95273

CAGE analysis