Hb_005653_070

Information

Type -
Description -
Location Contig5653: 72715-79575
Sequence    

Annotation

kegg
ID rcu:RCOM_1279970
description Vacuolar protein sorting-associated protein VPS4, putative (EC:3.6.4.3)
nr
ID AIN75626.1
description K+ transport growth defect-like protein [Hevea brasiliensis]
swissprot
ID Q9ZNT0
description Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana GN=SKD1 PE=1 SV=1
trembl
ID A0A088QDC7
description K+ transport growth defect-like protein OS=Hevea brasiliensis GN=SKD1 PE=2 SV=1
Gene Ontology
ID GO:0005634
description vacuolar protein sorting-associated protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48999: 72681-79548
cDNA
(Sanger)
(ID:Location)		 012_B24.ab1: 72681-73419 , 022_L20.ab1: 72681-73257 , 031_H23.ab1: 72684-73337 , 035_N24.ab1: 72684-74206 , 042_I16.ab1: 72681-73302 , 050_K19.ab1: 72682-73177

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005653_070 0.0 - - K+ transport growth defect-like protein [Hevea brasiliensis]
2 Hb_000964_030 0.0556267547 - - ADP/ATP carrier 2 [Theobroma cacao]
3 Hb_038574_010 0.0604794303 - - PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]
4 Hb_189216_010 0.0755098141 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
5 Hb_001728_040 0.0758790521 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
6 Hb_007218_120 0.07788168 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
7 Hb_000069_640 0.0788718447 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
8 Hb_002110_100 0.080217248 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
9 Hb_000080_130 0.0802480451 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
10 Hb_000723_230 0.0813025128 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
11 Hb_000220_100 0.0823496637 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
12 Hb_001662_130 0.0824984684 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
13 Hb_008748_030 0.0836466712 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006059_010 0.0841126834 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
15 Hb_000140_090 0.0843219297 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
16 Hb_000365_270 0.0843237201 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
17 Hb_002045_070 0.0847555684 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
18 Hb_000603_160 0.0848346899 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
19 Hb_053709_050 0.0852896748 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_003376_180 0.0854877515 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]

Gene co-expression network

sample Hb_005653_070 Hb_005653_070 Hb_000964_030 Hb_000964_030 Hb_005653_070--Hb_000964_030 Hb_038574_010 Hb_038574_010 Hb_005653_070--Hb_038574_010 Hb_189216_010 Hb_189216_010 Hb_005653_070--Hb_189216_010 Hb_001728_040 Hb_001728_040 Hb_005653_070--Hb_001728_040 Hb_007218_120 Hb_007218_120 Hb_005653_070--Hb_007218_120 Hb_000069_640 Hb_000069_640 Hb_005653_070--Hb_000069_640 Hb_000964_030--Hb_038574_010 Hb_002119_130 Hb_002119_130 Hb_000964_030--Hb_002119_130 Hb_000252_100 Hb_000252_100 Hb_000964_030--Hb_000252_100 Hb_000964_030--Hb_007218_120 Hb_053709_050 Hb_053709_050 Hb_000964_030--Hb_053709_050 Hb_038574_010--Hb_000069_640 Hb_008748_030 Hb_008748_030 Hb_038574_010--Hb_008748_030 Hb_000753_230 Hb_000753_230 Hb_038574_010--Hb_000753_230 Hb_003913_130 Hb_003913_130 Hb_038574_010--Hb_003913_130 Hb_005563_070 Hb_005563_070 Hb_189216_010--Hb_005563_070 Hb_000603_160 Hb_000603_160 Hb_189216_010--Hb_000603_160 Hb_002471_090 Hb_002471_090 Hb_189216_010--Hb_002471_090 Hb_000778_010 Hb_000778_010 Hb_189216_010--Hb_000778_010 Hb_189216_010--Hb_008748_030 Hb_002272_030 Hb_002272_030 Hb_189216_010--Hb_002272_030 Hb_002303_020 Hb_002303_020 Hb_001728_040--Hb_002303_020 Hb_000847_060 Hb_000847_060 Hb_001728_040--Hb_000847_060 Hb_000723_230 Hb_000723_230 Hb_001728_040--Hb_000723_230 Hb_015057_020 Hb_015057_020 Hb_001728_040--Hb_015057_020 Hb_003376_180 Hb_003376_180 Hb_001728_040--Hb_003376_180 Hb_007218_120--Hb_002119_130 Hb_000173_410 Hb_000173_410 Hb_007218_120--Hb_000173_410 Hb_002660_170 Hb_002660_170 Hb_007218_120--Hb_002660_170 Hb_000110_140 Hb_000110_140 Hb_007218_120--Hb_000110_140 Hb_003360_040 Hb_003360_040 Hb_007218_120--Hb_003360_040 Hb_007218_120--Hb_003376_180 Hb_000080_130 Hb_000080_130 Hb_000069_640--Hb_000080_130 Hb_000069_640--Hb_000603_160 Hb_004754_050 Hb_004754_050 Hb_000069_640--Hb_004754_050 Hb_000705_230 Hb_000705_230 Hb_000069_640--Hb_000705_230 Hb_013394_050 Hb_013394_050 Hb_000069_640--Hb_013394_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4527 39.3665 50.0002 74.691 16.345 19.9754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.7383 52.6502 46.1998 41.8046 48.2255

CAGE analysis