Hb_002119_130

Information

Type -
Description -
Location Contig2119: 185258-191223
Sequence    

Annotation

kegg
ID rcu:RCOM_1150230
description hypothetical protein
nr
ID XP_012072373.1
description PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L112
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04813 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21935: 185311-191595
cDNA
(Sanger)
(ID:Location)		 012_I24.ab1: 185313-186021 , 035_P01.ab1: 186668-190516 , 039_L24.ab1: 185466-185572

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002119_130 0.0 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
2 Hb_007218_120 0.0491706318 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
3 Hb_003360_040 0.0559836255 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
4 Hb_000920_200 0.0690784811 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
5 Hb_001218_030 0.0725573375 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
6 Hb_000173_410 0.0737171175 - - PREDICTED: BI1-like protein [Jatropha curcas]
7 Hb_000454_090 0.0755281153 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
8 Hb_011218_090 0.0802976424 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
9 Hb_000964_030 0.0818213667 - - ADP/ATP carrier 2 [Theobroma cacao]
10 Hb_004157_050 0.0853561639 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
11 Hb_000252_100 0.0859695678 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
12 Hb_000665_140 0.0870432832 - - PREDICTED: protein MEMO1 [Jatropha curcas]
13 Hb_001635_190 0.0872914929 - - RNA m5u methyltransferase, putative [Ricinus communis]
14 Hb_011344_190 0.0878724221 - - PREDICTED: maspardin [Jatropha curcas]
15 Hb_000853_150 0.0897899103 - - Fumarase 1 isoform 2 [Theobroma cacao]
16 Hb_004429_020 0.0902863313 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
17 Hb_000393_020 0.0904946373 - - lipid binding protein, putative [Ricinus communis]
18 Hb_003622_040 0.0906342182 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
19 Hb_005653_070 0.0922197451 - - K+ transport growth defect-like protein [Hevea brasiliensis]
20 Hb_005765_050 0.0924118887 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]

Gene co-expression network

sample Hb_002119_130 Hb_002119_130 Hb_007218_120 Hb_007218_120 Hb_002119_130--Hb_007218_120 Hb_003360_040 Hb_003360_040 Hb_002119_130--Hb_003360_040 Hb_000920_200 Hb_000920_200 Hb_002119_130--Hb_000920_200 Hb_001218_030 Hb_001218_030 Hb_002119_130--Hb_001218_030 Hb_000173_410 Hb_000173_410 Hb_002119_130--Hb_000173_410 Hb_000454_090 Hb_000454_090 Hb_002119_130--Hb_000454_090 Hb_007218_120--Hb_000173_410 Hb_002660_170 Hb_002660_170 Hb_007218_120--Hb_002660_170 Hb_000110_140 Hb_000110_140 Hb_007218_120--Hb_000110_140 Hb_007218_120--Hb_003360_040 Hb_003376_180 Hb_003376_180 Hb_007218_120--Hb_003376_180 Hb_003360_040--Hb_000454_090 Hb_003360_040--Hb_000920_200 Hb_001019_100 Hb_001019_100 Hb_003360_040--Hb_001019_100 Hb_000140_090 Hb_000140_090 Hb_003360_040--Hb_000140_090 Hb_000920_200--Hb_001218_030 Hb_006573_190 Hb_006573_190 Hb_000920_200--Hb_006573_190 Hb_001828_150 Hb_001828_150 Hb_000920_200--Hb_001828_150 Hb_000853_150 Hb_000853_150 Hb_000920_200--Hb_000853_150 Hb_001195_060 Hb_001195_060 Hb_000920_200--Hb_001195_060 Hb_001218_030--Hb_000853_150 Hb_001218_030--Hb_001828_150 Hb_000200_020 Hb_000200_020 Hb_001218_030--Hb_000200_020 Hb_001123_040 Hb_001123_040 Hb_001218_030--Hb_001123_040 Hb_000483_260 Hb_000483_260 Hb_001218_030--Hb_000483_260 Hb_000173_410--Hb_000454_090 Hb_000252_100 Hb_000252_100 Hb_000173_410--Hb_000252_100 Hb_000220_100 Hb_000220_100 Hb_000173_410--Hb_000220_100 Hb_000359_060 Hb_000359_060 Hb_000173_410--Hb_000359_060 Hb_005765_050 Hb_005765_050 Hb_000173_410--Hb_005765_050 Hb_004078_040 Hb_004078_040 Hb_000173_410--Hb_004078_040 Hb_000454_090--Hb_000252_100 Hb_000454_090--Hb_004078_040 Hb_000454_090--Hb_000220_100 Hb_000393_020 Hb_000393_020 Hb_000454_090--Hb_000393_020 Hb_000454_090--Hb_005765_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4479 24.5202 34.589 41.2188 12.8999 13.8912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.4794 40.0187 48.478 40.604 32.0366

CAGE analysis