Hb_000110_140

Information

Type -
Description -
Location Contig110: 198818-204307
Sequence    

Annotation

kegg
ID rcu:RCOM_1202230
description inorganic pyrophosphatase, putative (EC:3.6.1.1)
nr
ID AFP74894.1
description soluble inorganic pyrophosphatase [Hevea brasiliensis]
swissprot
ID Q9LFF9
description Soluble inorganic pyrophosphatase 4 OS=Arabidopsis thaliana GN=PPA4 PE=1 SV=1
trembl
ID S4SNB7
description Soluble inorganic pyrophosphatase OS=Hevea brasiliensis GN=SIP3 PE=2 SV=1
Gene Ontology
ID GO:0005829
description soluble inorganic pyrophosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03048: 198655-200787 , PASA_asmbl_03049: 201539-201729 , PASA_asmbl_03050: 202459-204122
cDNA
(Sanger)
(ID:Location)		 026_A02.ab1: 198655-200787

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_140 0.0 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
2 Hb_007218_120 0.0725906702 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
3 Hb_000061_230 0.0733636237 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
4 Hb_003376_180 0.0842568983 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
5 Hb_000454_090 0.0858029641 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
6 Hb_000173_470 0.0864325401 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
7 Hb_002660_170 0.0884199562 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
8 Hb_002045_070 0.0897356361 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
9 Hb_000856_010 0.0898814812 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
10 Hb_000173_410 0.0923716347 - - PREDICTED: BI1-like protein [Jatropha curcas]
11 Hb_000220_100 0.0925892909 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
12 Hb_000012_310 0.0931691645 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
13 Hb_000359_060 0.0945796753 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
14 Hb_000749_050 0.0954859407 - - mitochondrial thioredoxin [Hevea brasiliensis]
15 Hb_000252_100 0.0958121116 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
16 Hb_006059_010 0.0965342676 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
17 Hb_003360_040 0.0966231152 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
18 Hb_005653_070 0.0973888235 - - K+ transport growth defect-like protein [Hevea brasiliensis]
19 Hb_000300_430 0.0977349233 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
20 Hb_001514_120 0.0977610675 - - hypothetical protein VITISV_015004 [Vitis vinifera]

Gene co-expression network

sample Hb_000110_140 Hb_000110_140 Hb_007218_120 Hb_007218_120 Hb_000110_140--Hb_007218_120 Hb_000061_230 Hb_000061_230 Hb_000110_140--Hb_000061_230 Hb_003376_180 Hb_003376_180 Hb_000110_140--Hb_003376_180 Hb_000454_090 Hb_000454_090 Hb_000110_140--Hb_000454_090 Hb_000173_470 Hb_000173_470 Hb_000110_140--Hb_000173_470 Hb_002660_170 Hb_002660_170 Hb_000110_140--Hb_002660_170 Hb_002119_130 Hb_002119_130 Hb_007218_120--Hb_002119_130 Hb_000173_410 Hb_000173_410 Hb_007218_120--Hb_000173_410 Hb_007218_120--Hb_002660_170 Hb_003360_040 Hb_003360_040 Hb_007218_120--Hb_003360_040 Hb_007218_120--Hb_003376_180 Hb_038574_010 Hb_038574_010 Hb_000061_230--Hb_038574_010 Hb_000061_230--Hb_000173_470 Hb_002311_360 Hb_002311_360 Hb_000061_230--Hb_002311_360 Hb_003607_130 Hb_003607_130 Hb_000061_230--Hb_003607_130 Hb_000061_230--Hb_000454_090 Hb_002477_290 Hb_002477_290 Hb_003376_180--Hb_002477_290 Hb_005653_070 Hb_005653_070 Hb_003376_180--Hb_005653_070 Hb_003376_180--Hb_002660_170 Hb_001728_040 Hb_001728_040 Hb_003376_180--Hb_001728_040 Hb_000454_090--Hb_000173_410 Hb_000252_100 Hb_000252_100 Hb_000454_090--Hb_000252_100 Hb_004078_040 Hb_004078_040 Hb_000454_090--Hb_004078_040 Hb_000220_100 Hb_000220_100 Hb_000454_090--Hb_000220_100 Hb_000393_020 Hb_000393_020 Hb_000454_090--Hb_000393_020 Hb_005765_050 Hb_005765_050 Hb_000454_090--Hb_005765_050 Hb_000465_300 Hb_000465_300 Hb_000173_470--Hb_000465_300 Hb_000173_470--Hb_003607_130 Hb_000753_230 Hb_000753_230 Hb_000173_470--Hb_000753_230 Hb_000749_050 Hb_000749_050 Hb_000173_470--Hb_000749_050 Hb_023771_010 Hb_023771_010 Hb_000173_470--Hb_023771_010 Hb_000890_150 Hb_000890_150 Hb_000173_470--Hb_000890_150 Hb_000025_190 Hb_000025_190 Hb_002660_170--Hb_000025_190 Hb_006059_010 Hb_006059_010 Hb_002660_170--Hb_006059_010 Hb_000060_050 Hb_000060_050 Hb_002660_170--Hb_000060_050 Hb_000012_310 Hb_000012_310 Hb_002660_170--Hb_000012_310 Hb_002660_170--Hb_002477_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.9157 36.0843 22.1532 57.0981 15.7532 14.3507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.2449 52.4247 48.5177 35.8559 45.9839

CAGE analysis