Hb_002477_290

Information

Type rubber biosynthesis
Description Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex
Location Contig2477: 202026-207732
Sequence    

Annotation

kegg
ID rcu:RCOM_0654800
description dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase, putative (EC:2.3.1.168)
nr
ID XP_012068936.1
description PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
swissprot
ID Q5M729
description Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At1g54220 PE=2 SV=1
trembl
ID A0A067L8E3
description Acetyltransferase component of pyruvate dehydrogenase complex OS=Jatropha curcas GN=JCGZ_24739 PE=3 SV=1
Gene Ontology
ID GO:0045254
description dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25812: 202175-207693 , PASA_asmbl_25813: 204986-207667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_290 0.0 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
2 Hb_004880_150 0.0650918639 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
3 Hb_000841_050 0.0762846633 - - hypothetical protein L484_019972 [Morus notabilis]
4 Hb_002660_170 0.078330372 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
5 Hb_007218_120 0.0787358318 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
6 Hb_000251_030 0.0787449832 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
7 Hb_006059_010 0.0818158391 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
8 Hb_002357_060 0.0837306956 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
9 Hb_000367_090 0.0843081703 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
10 Hb_003376_180 0.0851889341 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
11 Hb_015057_020 0.0856905459 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
12 Hb_001221_020 0.0868247701 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
13 Hb_001493_150 0.0868637635 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
14 Hb_005648_010 0.0869491395 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
15 Hb_001269_130 0.0870687621 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
16 Hb_000185_220 0.0892255813 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
17 Hb_032920_070 0.0892271115 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
18 Hb_000684_040 0.0899855733 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
19 Hb_001728_040 0.0916176408 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
20 Hb_000025_190 0.0918186206 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_002477_290 Hb_002477_290 Hb_004880_150 Hb_004880_150 Hb_002477_290--Hb_004880_150 Hb_000841_050 Hb_000841_050 Hb_002477_290--Hb_000841_050 Hb_002660_170 Hb_002660_170 Hb_002477_290--Hb_002660_170 Hb_007218_120 Hb_007218_120 Hb_002477_290--Hb_007218_120 Hb_000251_030 Hb_000251_030 Hb_002477_290--Hb_000251_030 Hb_006059_010 Hb_006059_010 Hb_002477_290--Hb_006059_010 Hb_001221_020 Hb_001221_020 Hb_004880_150--Hb_001221_020 Hb_003776_060 Hb_003776_060 Hb_004880_150--Hb_003776_060 Hb_002811_100 Hb_002811_100 Hb_004880_150--Hb_002811_100 Hb_000025_190 Hb_000025_190 Hb_004880_150--Hb_000025_190 Hb_005648_010 Hb_005648_010 Hb_004880_150--Hb_005648_010 Hb_012393_030 Hb_012393_030 Hb_000841_050--Hb_012393_030 Hb_000841_050--Hb_001221_020 Hb_000841_050--Hb_004880_150 Hb_000663_060 Hb_000663_060 Hb_000841_050--Hb_000663_060 Hb_001269_130 Hb_001269_130 Hb_000841_050--Hb_001269_130 Hb_002660_170--Hb_000025_190 Hb_002660_170--Hb_007218_120 Hb_002660_170--Hb_006059_010 Hb_000060_050 Hb_000060_050 Hb_002660_170--Hb_000060_050 Hb_000012_310 Hb_000012_310 Hb_002660_170--Hb_000012_310 Hb_002119_130 Hb_002119_130 Hb_007218_120--Hb_002119_130 Hb_000173_410 Hb_000173_410 Hb_007218_120--Hb_000173_410 Hb_000110_140 Hb_000110_140 Hb_007218_120--Hb_000110_140 Hb_003360_040 Hb_003360_040 Hb_007218_120--Hb_003360_040 Hb_003376_180 Hb_003376_180 Hb_007218_120--Hb_003376_180 Hb_000251_030--Hb_007218_120 Hb_001728_140 Hb_001728_140 Hb_000251_030--Hb_001728_140 Hb_000251_030--Hb_003376_180 Hb_000251_030--Hb_006059_010 Hb_000548_070 Hb_000548_070 Hb_000251_030--Hb_000548_070 Hb_000185_220 Hb_000185_220 Hb_006059_010--Hb_000185_220 Hb_006059_010--Hb_000012_310 Hb_000109_180 Hb_000109_180 Hb_006059_010--Hb_000109_180 Hb_008748_030 Hb_008748_030 Hb_006059_010--Hb_008748_030 Hb_000297_120 Hb_000297_120 Hb_006059_010--Hb_000297_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.89594 6.68105 9.9545 14.3508 2.96357 4.53323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.43509 11.6167 8.88089 15.7447 11.6371

CAGE analysis