Hb_000548_070

Information

Type desease resistance
Description Gene Name: Synthase_beta
Location Contig548: 100849-105182
Sequence    

Annotation

kegg
ID pmum:103341553
description ATP synthase subunit beta, mitochondrial-like
nr
ID P29685.1
description RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
swissprot
ID P29685
description ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1
trembl
ID A0A067KFH8
description ATP synthase subunit beta OS=Jatropha curcas GN=JCGZ_09279 PE=3 SV=1
Gene Ontology
ID GO:0000275
description atp synthase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48050: 100885-105149
cDNA
(Sanger)
(ID:Location)		 018_H08.ab1: 104664-105154 , 027_A20.ab1: 104906-105149

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000548_070 0.0 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
2 Hb_001728_140 0.0557931299 - - -
3 Hb_009615_060 0.0654817236 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
4 Hb_003044_080 0.0779328123 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
5 Hb_001510_020 0.0812683871 - - Diaminopimelate epimerase, putative [Ricinus communis]
6 Hb_000800_090 0.0933784532 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
7 Hb_000251_030 0.0987335092 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
8 Hb_177215_030 0.0987356441 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
9 Hb_002477_290 0.0997418568 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
10 Hb_001493_150 0.1011032329 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
11 Hb_001623_190 0.103466577 - - PREDICTED: uncharacterized protein LOC105638473 [Jatropha curcas]
12 Hb_180378_010 0.1041601092 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
13 Hb_006059_010 0.1060175179 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
14 Hb_002631_130 0.1070528087 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
15 Hb_002876_270 0.1076104878 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
16 Hb_000197_190 0.1093551731 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
17 Hb_005016_010 0.1095885434 - - AMP dependent CoA ligase, putative [Ricinus communis]
18 Hb_000185_220 0.1107922482 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
19 Hb_005218_080 0.1120460876 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000535_050 0.1138883223 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]

Gene co-expression network

sample Hb_000548_070 Hb_000548_070 Hb_001728_140 Hb_001728_140 Hb_000548_070--Hb_001728_140 Hb_009615_060 Hb_009615_060 Hb_000548_070--Hb_009615_060 Hb_003044_080 Hb_003044_080 Hb_000548_070--Hb_003044_080 Hb_001510_020 Hb_001510_020 Hb_000548_070--Hb_001510_020 Hb_000800_090 Hb_000800_090 Hb_000548_070--Hb_000800_090 Hb_000251_030 Hb_000251_030 Hb_000548_070--Hb_000251_030 Hb_001728_140--Hb_009615_060 Hb_001493_150 Hb_001493_150 Hb_001728_140--Hb_001493_150 Hb_001728_140--Hb_000251_030 Hb_001728_140--Hb_001510_020 Hb_002477_290 Hb_002477_290 Hb_001728_140--Hb_002477_290 Hb_009615_060--Hb_001493_150 Hb_003159_050 Hb_003159_050 Hb_009615_060--Hb_003159_050 Hb_002631_130 Hb_002631_130 Hb_009615_060--Hb_002631_130 Hb_012393_030 Hb_012393_030 Hb_009615_060--Hb_012393_030 Hb_003044_080--Hb_000800_090 Hb_003044_080--Hb_009615_060 Hb_003044_080--Hb_001728_140 Hb_003044_080--Hb_002631_130 Hb_000950_010 Hb_000950_010 Hb_003044_080--Hb_000950_010 Hb_001510_020--Hb_002477_290 Hb_000684_520 Hb_000684_520 Hb_001510_020--Hb_000684_520 Hb_000210_060 Hb_000210_060 Hb_001510_020--Hb_000210_060 Hb_001510_020--Hb_000251_030 Hb_005701_120 Hb_005701_120 Hb_000800_090--Hb_005701_120 Hb_000025_190 Hb_000025_190 Hb_000800_090--Hb_000025_190 Hb_001946_310 Hb_001946_310 Hb_000800_090--Hb_001946_310 Hb_004046_030 Hb_004046_030 Hb_000800_090--Hb_004046_030 Hb_000185_220 Hb_000185_220 Hb_000800_090--Hb_000185_220 Hb_005648_010 Hb_005648_010 Hb_000800_090--Hb_005648_010 Hb_000251_030--Hb_002477_290 Hb_007218_120 Hb_007218_120 Hb_000251_030--Hb_007218_120 Hb_003376_180 Hb_003376_180 Hb_000251_030--Hb_003376_180 Hb_006059_010 Hb_006059_010 Hb_000251_030--Hb_006059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4571 28.1821 50.0112 90.2761 13.6839 17.8327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.4026 44.4027 58.6784 106.107 87.6901

CAGE analysis