Hb_002631_130

Information

Type -
Description -
Location Contig2631: 109587-122912
Sequence    

Annotation

kegg
ID pop:POPTR_0010s17880g
description POPTRDRAFT_567075; hypothetical protein
nr
ID XP_012087350.1
description PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
swissprot
ID Q42961
description Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A067JYI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22600 PE=4 SV=1
Gene Ontology
ID GO:0005576
description l-ascorbate oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27463: 110939-111467 , PASA_asmbl_27465: 119934-120946
cDNA
(Sanger)
(ID:Location)		 052_K03.ab1: 113766-114620

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_130 0.0 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
2 Hb_009615_060 0.0882648465 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
3 Hb_000197_190 0.0984178309 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
4 Hb_000494_030 0.0994030077 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
5 Hb_000768_160 0.1009431456 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
6 Hb_000683_050 0.1051984015 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
7 Hb_000548_070 0.1070528087 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
8 Hb_010390_010 0.1085346565 - - casein kinase, putative [Ricinus communis]
9 Hb_014497_060 0.1108039085 - - phosphofructokinase, putative [Ricinus communis]
10 Hb_003044_080 0.1120141764 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
11 Hb_022092_010 0.1120149651 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
12 Hb_007933_040 0.1156198494 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
13 Hb_002093_060 0.1157779419 - - phosphoprotein phosphatase, putative [Ricinus communis]
14 Hb_001226_130 0.1175795585 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
15 Hb_002928_200 0.1179652816 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
16 Hb_000649_060 0.1180014333 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
17 Hb_007416_070 0.1183978333 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
18 Hb_000800_090 0.1186703872 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
19 Hb_001623_190 0.1186876405 - - PREDICTED: uncharacterized protein LOC105638473 [Jatropha curcas]
20 Hb_012678_020 0.1192707104 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002631_130 Hb_002631_130 Hb_009615_060 Hb_009615_060 Hb_002631_130--Hb_009615_060 Hb_000197_190 Hb_000197_190 Hb_002631_130--Hb_000197_190 Hb_000494_030 Hb_000494_030 Hb_002631_130--Hb_000494_030 Hb_000768_160 Hb_000768_160 Hb_002631_130--Hb_000768_160 Hb_000683_050 Hb_000683_050 Hb_002631_130--Hb_000683_050 Hb_000548_070 Hb_000548_070 Hb_002631_130--Hb_000548_070 Hb_001493_150 Hb_001493_150 Hb_009615_060--Hb_001493_150 Hb_009615_060--Hb_000548_070 Hb_001728_140 Hb_001728_140 Hb_009615_060--Hb_001728_140 Hb_003159_050 Hb_003159_050 Hb_009615_060--Hb_003159_050 Hb_012393_030 Hb_012393_030 Hb_009615_060--Hb_012393_030 Hb_001799_060 Hb_001799_060 Hb_000197_190--Hb_001799_060 Hb_065968_010 Hb_065968_010 Hb_000197_190--Hb_065968_010 Hb_000703_330 Hb_000703_330 Hb_000197_190--Hb_000703_330 Hb_001957_010 Hb_001957_010 Hb_000197_190--Hb_001957_010 Hb_000009_060 Hb_000009_060 Hb_000197_190--Hb_000009_060 Hb_007416_070 Hb_007416_070 Hb_000197_190--Hb_007416_070 Hb_000701_030 Hb_000701_030 Hb_000494_030--Hb_000701_030 Hb_000494_030--Hb_000683_050 Hb_004030_060 Hb_004030_060 Hb_000494_030--Hb_004030_060 Hb_010390_010 Hb_010390_010 Hb_000494_030--Hb_010390_010 Hb_021576_070 Hb_021576_070 Hb_000494_030--Hb_021576_070 Hb_000494_030--Hb_007416_070 Hb_002928_200 Hb_002928_200 Hb_000768_160--Hb_002928_200 Hb_055062_040 Hb_055062_040 Hb_000768_160--Hb_055062_040 Hb_002093_060 Hb_002093_060 Hb_000768_160--Hb_002093_060 Hb_000768_160--Hb_009615_060 Hb_084670_010 Hb_084670_010 Hb_000768_160--Hb_084670_010 Hb_000683_050--Hb_007416_070 Hb_000683_050--Hb_004030_060 Hb_001811_170 Hb_001811_170 Hb_000683_050--Hb_001811_170 Hb_000683_050--Hb_010390_010 Hb_005854_040 Hb_005854_040 Hb_000683_050--Hb_005854_040 Hb_000548_070--Hb_001728_140 Hb_003044_080 Hb_003044_080 Hb_000548_070--Hb_003044_080 Hb_001510_020 Hb_001510_020 Hb_000548_070--Hb_001510_020 Hb_000800_090 Hb_000800_090 Hb_000548_070--Hb_000800_090 Hb_000251_030 Hb_000251_030 Hb_000548_070--Hb_000251_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2918 13.6812 29.316 57.3346 12.2274 12.6671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8692 12.663 21.6819 69.3722 49.9592

CAGE analysis