Hb_002928_200

Information

Type -
Description -
Location Contig2928: 160540-179482
Sequence    

Annotation

kegg
ID pop:POPTR_0005s27320g
description POPTRDRAFT_818865; hypothetical protein
nr
ID XP_012073645.1
description PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
swissprot
ID P56941
description Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1
trembl
ID B9H5I2
description Patched family protein OS=Populus trichocarpa GN=POPTR_0005s27320g PE=4 SV=2
Gene Ontology
ID GO:0005886
description hedgehog isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_200 0.0 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
2 Hb_000768_160 0.0877371338 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
3 Hb_000406_150 0.1145896821 - - sodium/hydrogen exchanger, putative [Ricinus communis]
4 Hb_002631_130 0.1179652816 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
5 Hb_002477_040 0.1194632929 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 [Theobroma cacao]
6 Hb_012678_020 0.1209792762 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
7 Hb_001006_270 0.1248565836 - - peptide transporter, putative [Ricinus communis]
8 Hb_002093_060 0.1264954782 - - phosphoprotein phosphatase, putative [Ricinus communis]
9 Hb_001226_130 0.1294308893 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
10 Hb_000152_700 0.1313895644 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
11 Hb_000649_060 0.1337354235 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
12 Hb_001951_060 0.1338945771 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
13 Hb_020805_180 0.1341558597 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
14 Hb_000159_120 0.1345947467 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
15 Hb_000254_070 0.1346368724 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
16 Hb_002851_010 0.1366160287 - - sugar transporter, putative [Ricinus communis]
17 Hb_021297_020 0.1368268382 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
18 Hb_002026_070 0.1368591578 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
19 Hb_012325_010 0.1380818579 - - hypothetical protein RCOM_0068670 [Ricinus communis]
20 Hb_001473_170 0.1393720384 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]

Gene co-expression network

sample Hb_002928_200 Hb_002928_200 Hb_000768_160 Hb_000768_160 Hb_002928_200--Hb_000768_160 Hb_000406_150 Hb_000406_150 Hb_002928_200--Hb_000406_150 Hb_002631_130 Hb_002631_130 Hb_002928_200--Hb_002631_130 Hb_002477_040 Hb_002477_040 Hb_002928_200--Hb_002477_040 Hb_012678_020 Hb_012678_020 Hb_002928_200--Hb_012678_020 Hb_001006_270 Hb_001006_270 Hb_002928_200--Hb_001006_270 Hb_055062_040 Hb_055062_040 Hb_000768_160--Hb_055062_040 Hb_002093_060 Hb_002093_060 Hb_000768_160--Hb_002093_060 Hb_009615_060 Hb_009615_060 Hb_000768_160--Hb_009615_060 Hb_000768_160--Hb_002631_130 Hb_084670_010 Hb_084670_010 Hb_000768_160--Hb_084670_010 Hb_000035_390 Hb_000035_390 Hb_000406_150--Hb_000035_390 Hb_004607_070 Hb_004607_070 Hb_000406_150--Hb_004607_070 Hb_004880_150 Hb_004880_150 Hb_000406_150--Hb_004880_150 Hb_042474_010 Hb_042474_010 Hb_000406_150--Hb_042474_010 Hb_003776_060 Hb_003776_060 Hb_000406_150--Hb_003776_060 Hb_002631_130--Hb_009615_060 Hb_000197_190 Hb_000197_190 Hb_002631_130--Hb_000197_190 Hb_000494_030 Hb_000494_030 Hb_002631_130--Hb_000494_030 Hb_000683_050 Hb_000683_050 Hb_002631_130--Hb_000683_050 Hb_000548_070 Hb_000548_070 Hb_002631_130--Hb_000548_070 Hb_002213_090 Hb_002213_090 Hb_002477_040--Hb_002213_090 Hb_002686_310 Hb_002686_310 Hb_002477_040--Hb_002686_310 Hb_002851_010 Hb_002851_010 Hb_002477_040--Hb_002851_010 Hb_000723_010 Hb_000723_010 Hb_002477_040--Hb_000723_010 Hb_135959_010 Hb_135959_010 Hb_002477_040--Hb_135959_010 Hb_007558_100 Hb_007558_100 Hb_012678_020--Hb_007558_100 Hb_012678_020--Hb_002093_060 Hb_007383_020 Hb_007383_020 Hb_012678_020--Hb_007383_020 Hb_004046_030 Hb_004046_030 Hb_012678_020--Hb_004046_030 Hb_000800_090 Hb_000800_090 Hb_012678_020--Hb_000800_090 Hb_003206_110 Hb_003206_110 Hb_012678_020--Hb_003206_110 Hb_000928_190 Hb_000928_190 Hb_001006_270--Hb_000928_190 Hb_001481_150 Hb_001481_150 Hb_001006_270--Hb_001481_150 Hb_000035_330 Hb_000035_330 Hb_001006_270--Hb_000035_330 Hb_000237_050 Hb_000237_050 Hb_001006_270--Hb_000237_050 Hb_004094_020 Hb_004094_020 Hb_001006_270--Hb_004094_020 Hb_000701_030 Hb_000701_030 Hb_001006_270--Hb_000701_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.54639 1.05226 1.01647 3.6469 1.12597 0.850136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.905347 1.11276 0.569292 4.29847 2.85003

CAGE analysis