Hb_002477_040

Information

Type -
Description -
Location Contig2477: 20585-24266
Sequence    

Annotation

kegg
ID pvu:PHAVU_010G131300g
description hypothetical protein
nr
ID XP_007024596.1
description P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 [Theobroma cacao]
swissprot
ID Q9CAI1
description Developmentally-regulated G-protein 2 OS=Arabidopsis thaliana GN=DRG2 PE=2 SV=1
trembl
ID A0A061GCD8
description P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_029113 PE=4 SV=1
Gene Ontology
ID GO:0005525
description developmentally-regulated g-protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25761: 12359-19954 , PASA_asmbl_25762: 12359-19954 , PASA_asmbl_25766: 20046-20203 , PASA_asmbl_25767: 20677-22122 , PASA_asmbl_25768: 22203-23326 , PASA_asmbl_25770: 23377-24592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_040 0.0 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 [Theobroma cacao]
2 Hb_002213_090 0.1156417527 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
3 Hb_002686_310 0.1191639975 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
4 Hb_002928_200 0.1194632929 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
5 Hb_002851_010 0.127906194 - - sugar transporter, putative [Ricinus communis]
6 Hb_000723_010 0.1282110683 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_135959_010 0.1309559938 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
8 Hb_001247_300 0.1311628024 - - hypothetical protein JCGZ_23167 [Jatropha curcas]
9 Hb_001006_270 0.131272608 - - peptide transporter, putative [Ricinus communis]
10 Hb_003058_200 0.1314620573 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
11 Hb_069619_010 0.1401859861 - - Aspartic proteinase precursor, putative [Ricinus communis]
12 Hb_021297_020 0.1426471936 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
13 Hb_075315_010 0.1431899176 - - ornithine aminotransferase [Camellia sinensis]
14 Hb_000674_010 0.1466574122 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
15 Hb_020805_180 0.1469851802 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
16 Hb_001780_150 0.1475821137 - - ceramidase, putative [Ricinus communis]
17 Hb_000768_160 0.1482636364 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
18 Hb_001227_100 0.1503760871 - - RecName: Full=Enolase 1; AltName: Full=2-phospho-D-glycerate hydro-lyase 1; AltName: Full=2-phosphoglycerate dehydratase 1; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
19 Hb_000849_080 0.1509100448 - - PREDICTED: monocopper oxidase-like protein SKU5 isoform X1 [Jatropha curcas]
20 Hb_000157_070 0.1520807755 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]

Gene co-expression network

sample Hb_002477_040 Hb_002477_040 Hb_002213_090 Hb_002213_090 Hb_002477_040--Hb_002213_090 Hb_002686_310 Hb_002686_310 Hb_002477_040--Hb_002686_310 Hb_002928_200 Hb_002928_200 Hb_002477_040--Hb_002928_200 Hb_002851_010 Hb_002851_010 Hb_002477_040--Hb_002851_010 Hb_000723_010 Hb_000723_010 Hb_002477_040--Hb_000723_010 Hb_135959_010 Hb_135959_010 Hb_002477_040--Hb_135959_010 Hb_003626_050 Hb_003626_050 Hb_002213_090--Hb_003626_050 Hb_000157_070 Hb_000157_070 Hb_002213_090--Hb_000157_070 Hb_001780_150 Hb_001780_150 Hb_002213_090--Hb_001780_150 Hb_002213_090--Hb_135959_010 Hb_107298_010 Hb_107298_010 Hb_002213_090--Hb_107298_010 Hb_007558_100 Hb_007558_100 Hb_002686_310--Hb_007558_100 Hb_075315_010 Hb_075315_010 Hb_002686_310--Hb_075315_010 Hb_003055_040 Hb_003055_040 Hb_002686_310--Hb_003055_040 Hb_000915_240 Hb_000915_240 Hb_002686_310--Hb_000915_240 Hb_179306_020 Hb_179306_020 Hb_002686_310--Hb_179306_020 Hb_143629_130 Hb_143629_130 Hb_002686_310--Hb_143629_130 Hb_000768_160 Hb_000768_160 Hb_002928_200--Hb_000768_160 Hb_000406_150 Hb_000406_150 Hb_002928_200--Hb_000406_150 Hb_002631_130 Hb_002631_130 Hb_002928_200--Hb_002631_130 Hb_012678_020 Hb_012678_020 Hb_002928_200--Hb_012678_020 Hb_001006_270 Hb_001006_270 Hb_002928_200--Hb_001006_270 Hb_002851_010--Hb_135959_010 Hb_002027_190 Hb_002027_190 Hb_002851_010--Hb_002027_190 Hb_020805_180 Hb_020805_180 Hb_002851_010--Hb_020805_180 Hb_002851_010--Hb_000157_070 Hb_000649_060 Hb_000649_060 Hb_002851_010--Hb_000649_060 Hb_003058_200 Hb_003058_200 Hb_002851_010--Hb_003058_200 Hb_069619_010 Hb_069619_010 Hb_000723_010--Hb_069619_010 Hb_001497_060 Hb_001497_060 Hb_000723_010--Hb_001497_060 Hb_000674_010 Hb_000674_010 Hb_000723_010--Hb_000674_010 Hb_000723_010--Hb_003058_200 Hb_000723_010--Hb_075315_010 Hb_000723_010--Hb_020805_180 Hb_135959_010--Hb_000157_070 Hb_135959_010--Hb_020805_180 Hb_158845_060 Hb_158845_060 Hb_135959_010--Hb_158845_060 Hb_135959_010--Hb_002027_190 Hb_007747_170 Hb_007747_170 Hb_135959_010--Hb_007747_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18165 2.35114 1.47413 6.56226 2.81479 3.39676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59517 1.36909 0.515674 8.33595 4.30749

CAGE analysis