Hb_000915_240

Information

Type -
Description -
Location Contig915: 226863-234570
Sequence    

Annotation

kegg
ID rcu:RCOM_0291690
description catalytic, putative (EC:3.4.16.2)
nr
ID XP_002531509.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q1PF50
description Probable serine protease EDA2 OS=Arabidopsis thaliana GN=EDA2 PE=2 SV=2
trembl
ID B9SZU0
description Catalytic, putative OS=Ricinus communis GN=RCOM_0291690 PE=4 SV=1
Gene Ontology
ID GO:0004180
description serine carboxypeptidase s28 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62234: 226888-234579
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000915_240 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_002686_310 0.0987805189 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
3 Hb_001369_360 0.0998460199 - - embryo yellow protein, partial [Manihot esculenta]
4 Hb_000109_170 0.1026630975 - - PREDICTED: uncharacterized protein LOC105649868 isoform X1 [Jatropha curcas]
5 Hb_000352_300 0.1038009217 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
6 Hb_000130_180 0.1047022019 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
7 Hb_001014_210 0.104869841 - - CYP51 [Hevea brasiliensis]
8 Hb_000031_110 0.1069465195 - - Coatomer, beta subunit isoform 1 [Theobroma cacao]
9 Hb_001821_150 0.1088786626 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
10 Hb_001258_110 0.1147148502 - - transporter, putative [Ricinus communis]
11 Hb_000161_210 0.1182628375 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
12 Hb_003097_140 0.118639514 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
13 Hb_006002_040 0.1192411612 - - PREDICTED: uncharacterized protein LOC105638085 [Jatropha curcas]
14 Hb_000366_200 0.1194995149 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
15 Hb_003988_050 0.1196476169 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
16 Hb_002902_130 0.1199986364 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
17 Hb_000477_100 0.1229710113 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
18 Hb_003994_220 0.1244969053 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
19 Hb_000784_070 0.1255552926 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
20 Hb_135757_020 0.1256308469 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]

Gene co-expression network

sample Hb_000915_240 Hb_000915_240 Hb_002686_310 Hb_002686_310 Hb_000915_240--Hb_002686_310 Hb_001369_360 Hb_001369_360 Hb_000915_240--Hb_001369_360 Hb_000109_170 Hb_000109_170 Hb_000915_240--Hb_000109_170 Hb_000352_300 Hb_000352_300 Hb_000915_240--Hb_000352_300 Hb_000130_180 Hb_000130_180 Hb_000915_240--Hb_000130_180 Hb_001014_210 Hb_001014_210 Hb_000915_240--Hb_001014_210 Hb_007558_100 Hb_007558_100 Hb_002686_310--Hb_007558_100 Hb_075315_010 Hb_075315_010 Hb_002686_310--Hb_075315_010 Hb_003055_040 Hb_003055_040 Hb_002686_310--Hb_003055_040 Hb_179306_020 Hb_179306_020 Hb_002686_310--Hb_179306_020 Hb_143629_130 Hb_143629_130 Hb_002686_310--Hb_143629_130 Hb_027445_020 Hb_027445_020 Hb_001369_360--Hb_027445_020 Hb_000976_100 Hb_000976_100 Hb_001369_360--Hb_000976_100 Hb_003097_140 Hb_003097_140 Hb_001369_360--Hb_003097_140 Hb_000237_040 Hb_000237_040 Hb_001369_360--Hb_000237_040 Hb_103684_010 Hb_103684_010 Hb_001369_360--Hb_103684_010 Hb_001821_150 Hb_001821_150 Hb_001369_360--Hb_001821_150 Hb_099878_030 Hb_099878_030 Hb_000109_170--Hb_099878_030 Hb_000140_280 Hb_000140_280 Hb_000109_170--Hb_000140_280 Hb_050147_010 Hb_050147_010 Hb_000109_170--Hb_050147_010 Hb_006856_010 Hb_006856_010 Hb_000109_170--Hb_006856_010 Hb_000159_090 Hb_000159_090 Hb_000109_170--Hb_000159_090 Hb_007481_010 Hb_007481_010 Hb_000352_300--Hb_007481_010 Hb_003528_030 Hb_003528_030 Hb_000352_300--Hb_003528_030 Hb_000184_070 Hb_000184_070 Hb_000352_300--Hb_000184_070 Hb_000477_100 Hb_000477_100 Hb_000352_300--Hb_000477_100 Hb_000046_500 Hb_000046_500 Hb_000352_300--Hb_000046_500 Hb_003683_020 Hb_003683_020 Hb_000352_300--Hb_003683_020 Hb_001258_110 Hb_001258_110 Hb_000130_180--Hb_001258_110 Hb_000130_180--Hb_001821_150 Hb_000130_180--Hb_001014_210 Hb_000140_350 Hb_000140_350 Hb_000130_180--Hb_000140_350 Hb_002284_250 Hb_002284_250 Hb_000130_180--Hb_002284_250 Hb_004531_120 Hb_004531_120 Hb_000130_180--Hb_004531_120 Hb_001014_210--Hb_001258_110 Hb_001014_210--Hb_003683_020 Hb_009569_040 Hb_009569_040 Hb_001014_210--Hb_009569_040 Hb_000208_280 Hb_000208_280 Hb_001014_210--Hb_000208_280 Hb_001014_210--Hb_007481_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.96155 6.3409 6.3594 24.9758 12.001 11.0962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.84349 5.59224 9.46156 22.0077 8.83475

CAGE analysis