Hb_000109_170

Information

Type -
Description -
Location Contig109: 247658-250952
Sequence    

Annotation

kegg
ID rcu:RCOM_0993490
description hypothetical protein
nr
ID XP_012092071.1
description PREDICTED: uncharacterized protein LOC105649868 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21797 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02719: 247544-251202 , PASA_asmbl_02720: 247610-248288
cDNA
(Sanger)
(ID:Location)		 050_A04.ab1: 249251-251202

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000109_170 0.0 - - PREDICTED: uncharacterized protein LOC105649868 isoform X1 [Jatropha curcas]
2 Hb_099878_030 0.1004017071 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
3 Hb_000915_240 0.1026630975 - - catalytic, putative [Ricinus communis]
4 Hb_000140_280 0.1100164929 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
5 Hb_050147_010 0.1103769837 - - hypothetical protein B456_005G052100 [Gossypium raimondii]
6 Hb_006856_010 0.112524768 - - hypothetical protein CISIN_1g019592mg [Citrus sinensis]
7 Hb_000159_090 0.1150729538 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
8 Hb_003940_040 0.1160392129 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000110_190 0.1174786223 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
10 Hb_000872_010 0.1177127128 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
11 Hb_000200_120 0.1178074416 - - PREDICTED: probable fructose-bisphosphate aldolase 3, chloroplastic [Jatropha curcas]
12 Hb_007638_030 0.118606389 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
13 Hb_000130_180 0.1203597687 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
14 Hb_000031_110 0.1203847555 - - Coatomer, beta subunit isoform 1 [Theobroma cacao]
15 Hb_001014_210 0.1205969548 - - CYP51 [Hevea brasiliensis]
16 Hb_002391_290 0.1210495419 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
17 Hb_001258_110 0.1226861464 - - transporter, putative [Ricinus communis]
18 Hb_002686_310 0.1228169224 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
19 Hb_000784_070 0.122924618 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
20 Hb_000608_320 0.1229451428 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]

Gene co-expression network

sample Hb_000109_170 Hb_000109_170 Hb_099878_030 Hb_099878_030 Hb_000109_170--Hb_099878_030 Hb_000915_240 Hb_000915_240 Hb_000109_170--Hb_000915_240 Hb_000140_280 Hb_000140_280 Hb_000109_170--Hb_000140_280 Hb_050147_010 Hb_050147_010 Hb_000109_170--Hb_050147_010 Hb_006856_010 Hb_006856_010 Hb_000109_170--Hb_006856_010 Hb_000159_090 Hb_000159_090 Hb_000109_170--Hb_000159_090 Hb_003940_040 Hb_003940_040 Hb_099878_030--Hb_003940_040 Hb_099878_030--Hb_000140_280 Hb_099878_030--Hb_000159_090 Hb_000429_150 Hb_000429_150 Hb_099878_030--Hb_000429_150 Hb_007638_030 Hb_007638_030 Hb_099878_030--Hb_007638_030 Hb_162603_010 Hb_162603_010 Hb_099878_030--Hb_162603_010 Hb_002686_310 Hb_002686_310 Hb_000915_240--Hb_002686_310 Hb_001369_360 Hb_001369_360 Hb_000915_240--Hb_001369_360 Hb_000352_300 Hb_000352_300 Hb_000915_240--Hb_000352_300 Hb_000130_180 Hb_000130_180 Hb_000915_240--Hb_000130_180 Hb_001014_210 Hb_001014_210 Hb_000915_240--Hb_001014_210 Hb_000140_280--Hb_007638_030 Hb_000140_280--Hb_000429_150 Hb_000140_280--Hb_000159_090 Hb_010964_040 Hb_010964_040 Hb_000140_280--Hb_010964_040 Hb_000392_190 Hb_000392_190 Hb_000140_280--Hb_000392_190 Hb_050147_010--Hb_003940_040 Hb_002631_080 Hb_002631_080 Hb_050147_010--Hb_002631_080 Hb_003813_050 Hb_003813_050 Hb_050147_010--Hb_003813_050 Hb_001268_110 Hb_001268_110 Hb_050147_010--Hb_001268_110 Hb_021443_100 Hb_021443_100 Hb_050147_010--Hb_021443_100 Hb_006856_010--Hb_000130_180 Hb_003671_010 Hb_003671_010 Hb_006856_010--Hb_003671_010 Hb_001882_050 Hb_001882_050 Hb_006856_010--Hb_001882_050 Hb_000062_270 Hb_000062_270 Hb_006856_010--Hb_000062_270 Hb_002391_290 Hb_002391_290 Hb_006856_010--Hb_002391_290 Hb_001258_110 Hb_001258_110 Hb_006856_010--Hb_001258_110 Hb_000159_090--Hb_007638_030 Hb_003683_020 Hb_003683_020 Hb_000159_090--Hb_003683_020 Hb_012498_010 Hb_012498_010 Hb_000159_090--Hb_012498_010 Hb_008970_030 Hb_008970_030 Hb_000159_090--Hb_008970_030 Hb_000159_090--Hb_010964_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.7006 43.7534 25.9192 133.698 93.4554 113.024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.6906 48.5258 59.9414 128.801 47.9378

CAGE analysis