Hb_099878_030

Information

Type -
Description -
Location Contig99878: 58227-60079
Sequence    

Annotation

kegg
ID rcu:RCOM_1753570
description hypothetical protein
nr
ID XP_012079736.1
description PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LQT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02405 PE=4 SV=1
Gene Ontology
ID GO:0000166
description coiled-coil domain-containing protein r3hcc1l isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099878_030 0.0 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
2 Hb_003940_040 0.0729802241 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000140_280 0.0779808802 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
4 Hb_000159_090 0.0873166733 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
5 Hb_000429_150 0.0904355609 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
6 Hb_007638_030 0.09051393 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
7 Hb_162603_010 0.0905323476 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_002235_170 0.0908100871 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]
9 Hb_001571_050 0.0912034209 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
10 Hb_000392_190 0.0912705091 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
11 Hb_001492_020 0.0930228606 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
12 Hb_000109_170 0.1004017071 - - PREDICTED: uncharacterized protein LOC105649868 isoform X1 [Jatropha curcas]
13 Hb_002150_040 0.1030864087 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
14 Hb_004109_310 0.1033546271 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
15 Hb_000110_190 0.1034680275 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
16 Hb_022833_100 0.1036818657 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
17 Hb_000640_120 0.1036904242 - - PREDICTED: uncharacterized protein LOC105642625 [Jatropha curcas]
18 Hb_004127_030 0.104311477 - - putative Rab geranylgeranyl transferase type II beta subunit family protein [Populus trichocarpa]
19 Hb_000038_080 0.1043998296 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
20 Hb_000862_030 0.1047432829 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_099878_030 Hb_099878_030 Hb_003940_040 Hb_003940_040 Hb_099878_030--Hb_003940_040 Hb_000140_280 Hb_000140_280 Hb_099878_030--Hb_000140_280 Hb_000159_090 Hb_000159_090 Hb_099878_030--Hb_000159_090 Hb_000429_150 Hb_000429_150 Hb_099878_030--Hb_000429_150 Hb_007638_030 Hb_007638_030 Hb_099878_030--Hb_007638_030 Hb_162603_010 Hb_162603_010 Hb_099878_030--Hb_162603_010 Hb_010142_030 Hb_010142_030 Hb_003940_040--Hb_010142_030 Hb_000392_190 Hb_000392_190 Hb_003940_040--Hb_000392_190 Hb_004109_310 Hb_004109_310 Hb_003940_040--Hb_004109_310 Hb_000023_280 Hb_000023_280 Hb_003940_040--Hb_000023_280 Hb_003940_040--Hb_000140_280 Hb_000140_280--Hb_007638_030 Hb_000140_280--Hb_000429_150 Hb_000140_280--Hb_000159_090 Hb_010964_040 Hb_010964_040 Hb_000140_280--Hb_010964_040 Hb_000140_280--Hb_000392_190 Hb_000159_090--Hb_007638_030 Hb_003683_020 Hb_003683_020 Hb_000159_090--Hb_003683_020 Hb_012498_010 Hb_012498_010 Hb_000159_090--Hb_012498_010 Hb_008970_030 Hb_008970_030 Hb_000159_090--Hb_008970_030 Hb_000159_090--Hb_010964_040 Hb_000429_150--Hb_007638_030 Hb_002414_050 Hb_002414_050 Hb_000429_150--Hb_002414_050 Hb_004567_090 Hb_004567_090 Hb_000429_150--Hb_004567_090 Hb_002414_060 Hb_002414_060 Hb_000429_150--Hb_002414_060 Hb_001571_050 Hb_001571_050 Hb_000429_150--Hb_001571_050 Hb_007638_030--Hb_010964_040 Hb_007638_030--Hb_004567_090 Hb_002110_190 Hb_002110_190 Hb_007638_030--Hb_002110_190 Hb_007026_040 Hb_007026_040 Hb_162603_010--Hb_007026_040 Hb_162603_010--Hb_000429_150 Hb_000236_310 Hb_000236_310 Hb_162603_010--Hb_000236_310 Hb_000830_030 Hb_000830_030 Hb_162603_010--Hb_000830_030 Hb_162603_010--Hb_000140_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.7753 6.66833 5.25213 19.1139 8.22575 19.0594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6497 9.15856 8.41048 16.9557 9.324

CAGE analysis