Hb_162603_010

Information

Type -
Description -
Location Contig162603: 1472-4261
Sequence    

Annotation

kegg
ID rcu:RCOM_0534040
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_002521518.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q9P775
description Uncharacterized WD repeat-containing protein C17D11.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1711.16 PE=1 SV=1
trembl
ID B9S699
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0534040 PE=4 SV=1
Gene Ontology
ID GO:0016746
description periodic tryptophan protein 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14753: 1582-3372
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162603_010 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_007026_040 0.0807472437 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
3 Hb_000429_150 0.0902157135 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
4 Hb_099878_030 0.0905323476 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
5 Hb_000236_310 0.0943339295 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
6 Hb_000830_030 0.0946856594 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
7 Hb_000140_280 0.0973297711 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
8 Hb_000083_160 0.0994523669 - - Cell division cycle protein, putative [Ricinus communis]
9 Hb_007380_060 0.1013020493 - - hypothetical protein POPTR_0006s00280g [Populus trichocarpa]
10 Hb_007638_030 0.1013443334 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
11 Hb_103760_010 0.1021682099 - - serine/arginine rich splicing factor, putative [Ricinus communis]
12 Hb_000271_090 0.1027709687 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_000038_080 0.104492484 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
14 Hb_000613_050 0.104781384 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
15 Hb_168978_030 0.1051099127 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
16 Hb_002811_180 0.1058338978 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001279_150 0.1058764404 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
18 Hb_000110_190 0.1070126594 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
19 Hb_031284_040 0.107222708 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
20 Hb_000159_090 0.1091103809 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_162603_010 Hb_162603_010 Hb_007026_040 Hb_007026_040 Hb_162603_010--Hb_007026_040 Hb_000429_150 Hb_000429_150 Hb_162603_010--Hb_000429_150 Hb_099878_030 Hb_099878_030 Hb_162603_010--Hb_099878_030 Hb_000236_310 Hb_000236_310 Hb_162603_010--Hb_000236_310 Hb_000830_030 Hb_000830_030 Hb_162603_010--Hb_000830_030 Hb_000140_280 Hb_000140_280 Hb_162603_010--Hb_000140_280 Hb_103760_010 Hb_103760_010 Hb_007026_040--Hb_103760_010 Hb_007026_040--Hb_000236_310 Hb_002600_140 Hb_002600_140 Hb_007026_040--Hb_002600_140 Hb_032050_040 Hb_032050_040 Hb_007026_040--Hb_032050_040 Hb_000718_080 Hb_000718_080 Hb_007026_040--Hb_000718_080 Hb_007638_030 Hb_007638_030 Hb_000429_150--Hb_007638_030 Hb_000429_150--Hb_000140_280 Hb_002414_050 Hb_002414_050 Hb_000429_150--Hb_002414_050 Hb_004567_090 Hb_004567_090 Hb_000429_150--Hb_004567_090 Hb_002414_060 Hb_002414_060 Hb_000429_150--Hb_002414_060 Hb_001571_050 Hb_001571_050 Hb_000429_150--Hb_001571_050 Hb_003940_040 Hb_003940_040 Hb_099878_030--Hb_003940_040 Hb_099878_030--Hb_000140_280 Hb_000159_090 Hb_000159_090 Hb_099878_030--Hb_000159_090 Hb_099878_030--Hb_000429_150 Hb_099878_030--Hb_007638_030 Hb_005228_130 Hb_005228_130 Hb_000236_310--Hb_005228_130 Hb_001449_040 Hb_001449_040 Hb_000236_310--Hb_001449_040 Hb_000613_050 Hb_000613_050 Hb_000236_310--Hb_000613_050 Hb_011716_020 Hb_011716_020 Hb_000236_310--Hb_011716_020 Hb_000127_040 Hb_000127_040 Hb_000236_310--Hb_000127_040 Hb_000236_310--Hb_002600_140 Hb_000156_010 Hb_000156_010 Hb_000830_030--Hb_000156_010 Hb_008484_060 Hb_008484_060 Hb_000830_030--Hb_008484_060 Hb_004109_080 Hb_004109_080 Hb_000830_030--Hb_004109_080 Hb_000022_020 Hb_000022_020 Hb_000830_030--Hb_000022_020 Hb_002785_050 Hb_002785_050 Hb_000830_030--Hb_002785_050 Hb_056691_060 Hb_056691_060 Hb_000830_030--Hb_056691_060 Hb_000140_280--Hb_007638_030 Hb_000140_280--Hb_000159_090 Hb_010964_040 Hb_010964_040 Hb_000140_280--Hb_010964_040 Hb_000392_190 Hb_000392_190 Hb_000140_280--Hb_000392_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.02011 7.53825 8.69604 15.6371 11.1754 29.0499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8101 12.8946 10.3667 19.8675 12.4629

CAGE analysis