Hb_003940_040

Information

Type -
Description -
Location Contig3940: 48646-49324
Sequence    

Annotation

kegg
ID rcu:RCOM_1753570
description hypothetical protein
nr
ID XP_002513720.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJ01
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1753570 PE=4 SV=1
Gene Ontology
ID GO:0000166
description coiled-coil domain-containing protein r3hcc1l isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39466: 48825-49276 , PASA_asmbl_39467: 49624-49967
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003940_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_099878_030 0.0729802241 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
3 Hb_010142_030 0.0782599211 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000392_190 0.0849240739 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
5 Hb_004109_310 0.0870758841 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
6 Hb_000023_280 0.0887073771 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
7 Hb_000140_280 0.0928719123 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
8 Hb_000056_260 0.0939912328 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
9 Hb_007403_060 0.0972964083 - - PREDICTED: CAAX prenyl protease 2 [Jatropha curcas]
10 Hb_003693_070 0.0977285223 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
11 Hb_005914_080 0.0985941679 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
12 Hb_000009_240 0.0991610883 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
13 Hb_000159_090 0.0995510933 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
14 Hb_000120_060 0.099936008 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
15 Hb_001492_020 0.1006477047 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
16 Hb_004127_030 0.1009911254 - - putative Rab geranylgeranyl transferase type II beta subunit family protein [Populus trichocarpa]
17 Hb_002445_120 0.1012929776 - - secretory carrier membrane protein, putative [Ricinus communis]
18 Hb_000318_290 0.1028206067 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
19 Hb_007638_030 0.1033115153 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
20 Hb_003777_310 0.1040082373 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003940_040 Hb_003940_040 Hb_099878_030 Hb_099878_030 Hb_003940_040--Hb_099878_030 Hb_010142_030 Hb_010142_030 Hb_003940_040--Hb_010142_030 Hb_000392_190 Hb_000392_190 Hb_003940_040--Hb_000392_190 Hb_004109_310 Hb_004109_310 Hb_003940_040--Hb_004109_310 Hb_000023_280 Hb_000023_280 Hb_003940_040--Hb_000023_280 Hb_000140_280 Hb_000140_280 Hb_003940_040--Hb_000140_280 Hb_099878_030--Hb_000140_280 Hb_000159_090 Hb_000159_090 Hb_099878_030--Hb_000159_090 Hb_000429_150 Hb_000429_150 Hb_099878_030--Hb_000429_150 Hb_007638_030 Hb_007638_030 Hb_099878_030--Hb_007638_030 Hb_162603_010 Hb_162603_010 Hb_099878_030--Hb_162603_010 Hb_003693_070 Hb_003693_070 Hb_010142_030--Hb_003693_070 Hb_000120_060 Hb_000120_060 Hb_010142_030--Hb_000120_060 Hb_010142_030--Hb_000023_280 Hb_000116_410 Hb_000116_410 Hb_010142_030--Hb_000116_410 Hb_001635_090 Hb_001635_090 Hb_010142_030--Hb_001635_090 Hb_000392_190--Hb_000140_280 Hb_006277_110 Hb_006277_110 Hb_000392_190--Hb_006277_110 Hb_000392_190--Hb_099878_030 Hb_000735_110 Hb_000735_110 Hb_000392_190--Hb_000735_110 Hb_009787_030 Hb_009787_030 Hb_000392_190--Hb_009787_030 Hb_006913_010 Hb_006913_010 Hb_004109_310--Hb_006913_010 Hb_007017_030 Hb_007017_030 Hb_004109_310--Hb_007017_030 Hb_001571_050 Hb_001571_050 Hb_004109_310--Hb_001571_050 Hb_002481_080 Hb_002481_080 Hb_004109_310--Hb_002481_080 Hb_073973_100 Hb_073973_100 Hb_004109_310--Hb_073973_100 Hb_000665_060 Hb_000665_060 Hb_004109_310--Hb_000665_060 Hb_003761_010 Hb_003761_010 Hb_000023_280--Hb_003761_010 Hb_004143_040 Hb_004143_040 Hb_000023_280--Hb_004143_040 Hb_000645_090 Hb_000645_090 Hb_000023_280--Hb_000645_090 Hb_001215_040 Hb_001215_040 Hb_000023_280--Hb_001215_040 Hb_000023_280--Hb_000116_410 Hb_000140_280--Hb_007638_030 Hb_000140_280--Hb_000429_150 Hb_000140_280--Hb_000159_090 Hb_010964_040 Hb_010964_040 Hb_000140_280--Hb_010964_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.73451 4.16703 3.12536 11.623 5.36911 11.2786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.1312 7.52317 6.59651 10.8529 3.61608

CAGE analysis