Hb_000159_090

Information

Type -
Description -
Location Contig159: 159954-162872
Sequence    

Annotation

kegg
ID pop:POPTR_0015s153201
description hypothetical protein
nr
ID XP_006374696.1
description hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
swissprot
ID Q67BJ4
description Lactosylceramide 4-alpha-galactosyltransferase OS=Mus musculus GN=A4galt PE=2 SV=1
trembl
ID U5FMW0
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0015s153201g PE=4 SV=1
Gene Ontology
ID GO:0016757
description lactosylceramide 4-alpha-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14112: 161417-179666
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000159_090 0.0 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
2 Hb_007638_030 0.0484456367 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
3 Hb_003683_020 0.0618721769 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_000140_280 0.0636508295 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
5 Hb_012498_010 0.0665409931 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
6 Hb_008970_030 0.0675583918 - - arf gtpase-activating protein, putative [Ricinus communis]
7 Hb_010964_040 0.0708208636 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
8 Hb_007460_020 0.0711185763 - - PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 1 [Jatropha curcas]
9 Hb_004127_030 0.0791496399 - - putative Rab geranylgeranyl transferase type II beta subunit family protein [Populus trichocarpa]
10 Hb_002110_190 0.079379211 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
11 Hb_026198_070 0.0796169459 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
12 Hb_003528_030 0.0816131493 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
13 Hb_007481_010 0.0826894829 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
14 Hb_014834_050 0.0836156103 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000429_150 0.0839137662 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
16 Hb_054865_150 0.0840357078 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
17 Hb_000156_010 0.0841180869 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
18 Hb_000111_320 0.0841917742 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
19 Hb_003750_050 0.0845644974 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
20 Hb_002909_140 0.0863733891 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000159_090 Hb_000159_090 Hb_007638_030 Hb_007638_030 Hb_000159_090--Hb_007638_030 Hb_003683_020 Hb_003683_020 Hb_000159_090--Hb_003683_020 Hb_000140_280 Hb_000140_280 Hb_000159_090--Hb_000140_280 Hb_012498_010 Hb_012498_010 Hb_000159_090--Hb_012498_010 Hb_008970_030 Hb_008970_030 Hb_000159_090--Hb_008970_030 Hb_010964_040 Hb_010964_040 Hb_000159_090--Hb_010964_040 Hb_007638_030--Hb_010964_040 Hb_007638_030--Hb_000140_280 Hb_000429_150 Hb_000429_150 Hb_007638_030--Hb_000429_150 Hb_004567_090 Hb_004567_090 Hb_007638_030--Hb_004567_090 Hb_002110_190 Hb_002110_190 Hb_007638_030--Hb_002110_190 Hb_003683_020--Hb_012498_010 Hb_010142_020 Hb_010142_020 Hb_003683_020--Hb_010142_020 Hb_013399_020 Hb_013399_020 Hb_003683_020--Hb_013399_020 Hb_003528_030 Hb_003528_030 Hb_003683_020--Hb_003528_030 Hb_000260_330 Hb_000260_330 Hb_003683_020--Hb_000260_330 Hb_000140_280--Hb_000429_150 Hb_000140_280--Hb_010964_040 Hb_000392_190 Hb_000392_190 Hb_000140_280--Hb_000392_190 Hb_099878_030 Hb_099878_030 Hb_000140_280--Hb_099878_030 Hb_004109_080 Hb_004109_080 Hb_012498_010--Hb_004109_080 Hb_005291_050 Hb_005291_050 Hb_012498_010--Hb_005291_050 Hb_000156_010 Hb_000156_010 Hb_012498_010--Hb_000156_010 Hb_012498_010--Hb_004567_090 Hb_012498_010--Hb_010142_020 Hb_008970_030--Hb_012498_010 Hb_007481_010 Hb_007481_010 Hb_008970_030--Hb_007481_010 Hb_003025_100 Hb_003025_100 Hb_008970_030--Hb_003025_100 Hb_000192_080 Hb_000192_080 Hb_008970_030--Hb_000192_080 Hb_013726_090 Hb_013726_090 Hb_008970_030--Hb_013726_090 Hb_010964_040--Hb_004567_090 Hb_001279_150 Hb_001279_150 Hb_010964_040--Hb_001279_150 Hb_000200_020 Hb_000200_020 Hb_010964_040--Hb_000200_020 Hb_003750_050 Hb_003750_050 Hb_010964_040--Hb_003750_050 Hb_002481_080 Hb_002481_080 Hb_010964_040--Hb_002481_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.24258 6.75637 8.41114 18.1413 10.0342 15.3915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4791 8.88576 12.0419 14.2164 9.23164

CAGE analysis