Hb_000392_190

Information

Type -
Description -
Location Contig392: 185834-189605
Sequence    

Annotation

kegg
ID pop:POPTR_0012s07090g
description POPTRDRAFT_661875; hypothetical protein
nr
ID XP_012080253.1
description PREDICTED: NAP1-related protein 2 [Jatropha curcas]
swissprot
ID Q8LC68
description NAP1-related protein 2 OS=Arabidopsis thaliana GN=NRP2 PE=1 SV=2
trembl
ID A0A067KG78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11616 PE=3 SV=1
Gene Ontology
ID GO:0005634
description nap1-related protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39252: 185826-191466
cDNA
(Sanger)
(ID:Location)		 001_M20.ab1: 185826-189568 , 020_B16.ab1: 185861-189563 , 022_B24.ab1: 185826-189286

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_190 0.0 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
2 Hb_000140_280 0.0743412345 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
3 Hb_006277_110 0.0832685661 - - protein with unknown function [Ricinus communis]
4 Hb_003940_040 0.0849240739 - - conserved hypothetical protein [Ricinus communis]
5 Hb_099878_030 0.0912705091 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
6 Hb_000735_110 0.091808231 - - fk506-binding protein, putative [Ricinus communis]
7 Hb_009787_030 0.097345459 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
8 Hb_001348_020 0.0986045649 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
9 Hb_001250_060 0.1038137976 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
10 Hb_025194_100 0.1041361846 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
11 Hb_086085_020 0.1045051265 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
12 Hb_000159_090 0.104828378 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
13 Hb_004127_030 0.1053859585 - - putative Rab geranylgeranyl transferase type II beta subunit family protein [Populus trichocarpa]
14 Hb_011794_080 0.1057321474 - - acyl-CoA thioesterase, putative [Ricinus communis]
15 Hb_002150_040 0.1060186218 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
16 Hb_002811_030 0.1067253146 - - PREDICTED: cysteine synthase [Jatropha curcas]
17 Hb_000429_150 0.1101630773 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
18 Hb_000034_070 0.1105055696 - - PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Jatropha curcas]
19 Hb_002289_080 0.1115373933 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
20 Hb_152371_010 0.1122235042 - - RNA-binding KH domain-containing protein [Theobroma cacao]

Gene co-expression network

sample Hb_000392_190 Hb_000392_190 Hb_000140_280 Hb_000140_280 Hb_000392_190--Hb_000140_280 Hb_006277_110 Hb_006277_110 Hb_000392_190--Hb_006277_110 Hb_003940_040 Hb_003940_040 Hb_000392_190--Hb_003940_040 Hb_099878_030 Hb_099878_030 Hb_000392_190--Hb_099878_030 Hb_000735_110 Hb_000735_110 Hb_000392_190--Hb_000735_110 Hb_009787_030 Hb_009787_030 Hb_000392_190--Hb_009787_030 Hb_007638_030 Hb_007638_030 Hb_000140_280--Hb_007638_030 Hb_000429_150 Hb_000429_150 Hb_000140_280--Hb_000429_150 Hb_000159_090 Hb_000159_090 Hb_000140_280--Hb_000159_090 Hb_010964_040 Hb_010964_040 Hb_000140_280--Hb_010964_040 Hb_000140_280--Hb_099878_030 Hb_002284_230 Hb_002284_230 Hb_006277_110--Hb_002284_230 Hb_152371_010 Hb_152371_010 Hb_006277_110--Hb_152371_010 Hb_019654_030 Hb_019654_030 Hb_006277_110--Hb_019654_030 Hb_006907_130 Hb_006907_130 Hb_006277_110--Hb_006907_130 Hb_006277_110--Hb_003940_040 Hb_003940_040--Hb_099878_030 Hb_010142_030 Hb_010142_030 Hb_003940_040--Hb_010142_030 Hb_004109_310 Hb_004109_310 Hb_003940_040--Hb_004109_310 Hb_000023_280 Hb_000023_280 Hb_003940_040--Hb_000023_280 Hb_003940_040--Hb_000140_280 Hb_099878_030--Hb_000159_090 Hb_099878_030--Hb_000429_150 Hb_099878_030--Hb_007638_030 Hb_162603_010 Hb_162603_010 Hb_099878_030--Hb_162603_010 Hb_000141_080 Hb_000141_080 Hb_000735_110--Hb_000141_080 Hb_003929_270 Hb_003929_270 Hb_000735_110--Hb_003929_270 Hb_001250_060 Hb_001250_060 Hb_000735_110--Hb_001250_060 Hb_086085_020 Hb_086085_020 Hb_000735_110--Hb_086085_020 Hb_002053_140 Hb_002053_140 Hb_000735_110--Hb_002053_140 Hb_001427_160 Hb_001427_160 Hb_009787_030--Hb_001427_160 Hb_001366_370 Hb_001366_370 Hb_009787_030--Hb_001366_370 Hb_011344_120 Hb_011344_120 Hb_009787_030--Hb_011344_120 Hb_009787_030--Hb_000141_080 Hb_000115_150 Hb_000115_150 Hb_009787_030--Hb_000115_150 Hb_009787_030--Hb_002053_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.4758 19.7263 32.3573 104.457 39.3893 94.278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.1495 66.0582 50.072 96.8126 47.0795

CAGE analysis