Hb_001250_060

Information

Type -
Description -
Location Contig1250: 37310-40348
Sequence    

Annotation

kegg
ID rcu:RCOM_0529240
description Signal recognition particle receptor subunit beta, putative
nr
ID XP_012085428.1
description PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
swissprot
ID Q54XX1
description Signal recognition particle receptor subunit beta OS=Dictyostelium discoideum GN=srprb PE=3 SV=1
trembl
ID A0A067JUV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17776 PE=4 SV=1
Gene Ontology
ID GO:0005783
description signal recognition particle receptor subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001250_060 0.0 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
2 Hb_066768_010 0.0781508341 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_003929_270 0.0920556083 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
4 Hb_129672_010 0.0936736925 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
5 Hb_000735_110 0.0940494156 - - fk506-binding protein, putative [Ricinus communis]
6 Hb_000326_090 0.0952079132 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
7 Hb_000167_080 0.0957406996 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
8 Hb_000676_080 0.0961358636 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
9 Hb_002053_140 0.0985133005 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
10 Hb_001268_050 0.0999834505 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
11 Hb_000453_160 0.1024090276 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
12 Hb_003633_030 0.1031659111 - - f-actin capping protein alpha, putative [Ricinus communis]
13 Hb_000392_190 0.1038137976 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
14 Hb_086085_020 0.1040636988 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
15 Hb_001935_130 0.1062065374 - - PREDICTED: uncharacterized protein LOC105643176 [Jatropha curcas]
16 Hb_000056_260 0.107133936 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
17 Hb_000768_210 0.1080111325 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
18 Hb_021238_050 0.110519452 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003502_090 0.1114891665 - - ATP synthase subunit d, putative [Ricinus communis]
20 Hb_000002_380 0.1119236353 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]

Gene co-expression network

sample Hb_001250_060 Hb_001250_060 Hb_066768_010 Hb_066768_010 Hb_001250_060--Hb_066768_010 Hb_003929_270 Hb_003929_270 Hb_001250_060--Hb_003929_270 Hb_129672_010 Hb_129672_010 Hb_001250_060--Hb_129672_010 Hb_000735_110 Hb_000735_110 Hb_001250_060--Hb_000735_110 Hb_000326_090 Hb_000326_090 Hb_001250_060--Hb_000326_090 Hb_000167_080 Hb_000167_080 Hb_001250_060--Hb_000167_080 Hb_004784_020 Hb_004784_020 Hb_066768_010--Hb_004784_020 Hb_031089_040 Hb_031089_040 Hb_066768_010--Hb_031089_040 Hb_066768_010--Hb_000326_090 Hb_000083_170 Hb_000083_170 Hb_066768_010--Hb_000083_170 Hb_005867_020 Hb_005867_020 Hb_066768_010--Hb_005867_020 Hb_002053_140 Hb_002053_140 Hb_003929_270--Hb_002053_140 Hb_086085_020 Hb_086085_020 Hb_003929_270--Hb_086085_020 Hb_000141_080 Hb_000141_080 Hb_003929_270--Hb_000141_080 Hb_003929_270--Hb_000735_110 Hb_030736_020 Hb_030736_020 Hb_003929_270--Hb_030736_020 Hb_006618_120 Hb_006618_120 Hb_003929_270--Hb_006618_120 Hb_000676_080 Hb_000676_080 Hb_129672_010--Hb_000676_080 Hb_000635_070 Hb_000635_070 Hb_129672_010--Hb_000635_070 Hb_009270_030 Hb_009270_030 Hb_129672_010--Hb_009270_030 Hb_082006_010 Hb_082006_010 Hb_129672_010--Hb_082006_010 Hb_129672_010--Hb_086085_020 Hb_000735_110--Hb_000141_080 Hb_000392_190 Hb_000392_190 Hb_000735_110--Hb_000392_190 Hb_000735_110--Hb_086085_020 Hb_000735_110--Hb_002053_140 Hb_000326_090--Hb_000083_170 Hb_002296_040 Hb_002296_040 Hb_000326_090--Hb_002296_040 Hb_000326_090--Hb_005867_020 Hb_000326_090--Hb_031089_040 Hb_000453_160 Hb_000453_160 Hb_000167_080--Hb_000453_160 Hb_001168_020 Hb_001168_020 Hb_000167_080--Hb_001168_020 Hb_154948_040 Hb_154948_040 Hb_000167_080--Hb_154948_040 Hb_000167_080--Hb_086085_020 Hb_001252_130 Hb_001252_130 Hb_000167_080--Hb_001252_130 Hb_001287_080 Hb_001287_080 Hb_000167_080--Hb_001287_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.25632 2.57112 6.08525 21.2748 8.15919 17.5075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8961 15.8485 8.0649 10.3731 6.12195

CAGE analysis