Hb_000453_160

Information

Type -
Description -
Location Contig453: 103557-108949
Sequence    

Annotation

kegg
ID rcu:RCOM_1394920
description vacuolar protein sorting 26, vps26, putative
nr
ID XP_002532583.1
description vacuolar protein sorting 26, vps26, putative [Ricinus communis]
swissprot
ID Q9FJD0
description Vacuolar protein sorting-associated protein 26A OS=Arabidopsis thaliana GN=VPS26A PE=2 SV=1
trembl
ID B9T2W4
description Vacuolar protein sorting 26, vps26, putative OS=Ricinus communis GN=RCOM_1394920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43264: 103202-108863
cDNA
(Sanger)
(ID:Location)		 039_J17.ab1: 103202-108863

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_160 0.0 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
2 Hb_002053_140 0.0758370723 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
3 Hb_000167_080 0.0770659255 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
4 Hb_001699_100 0.0774416808 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
5 Hb_000783_010 0.0794603672 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
6 Hb_005489_060 0.0796013418 - - Anamorsin, putative [Ricinus communis]
7 Hb_001633_130 0.0801092157 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
8 Hb_000002_380 0.0801299882 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
9 Hb_154948_040 0.0810037871 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
10 Hb_007878_010 0.0832467634 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
11 Hb_001252_130 0.08643329 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
12 Hb_007441_190 0.0866729932 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
13 Hb_000594_050 0.0868414298 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
14 Hb_001159_130 0.0870420391 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
15 Hb_000720_040 0.0878005003 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
16 Hb_003108_020 0.0881643797 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
17 Hb_000510_300 0.0884481446 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
18 Hb_172632_120 0.0885144444 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002641_060 0.0910890501 - - prefoldin subunit, putative [Ricinus communis]
20 Hb_001287_080 0.0912539797 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000453_160 Hb_000453_160 Hb_002053_140 Hb_002053_140 Hb_000453_160--Hb_002053_140 Hb_000167_080 Hb_000167_080 Hb_000453_160--Hb_000167_080 Hb_001699_100 Hb_001699_100 Hb_000453_160--Hb_001699_100 Hb_000783_010 Hb_000783_010 Hb_000453_160--Hb_000783_010 Hb_005489_060 Hb_005489_060 Hb_000453_160--Hb_005489_060 Hb_001633_130 Hb_001633_130 Hb_000453_160--Hb_001633_130 Hb_030736_020 Hb_030736_020 Hb_002053_140--Hb_030736_020 Hb_001427_160 Hb_001427_160 Hb_002053_140--Hb_001427_160 Hb_000141_080 Hb_000141_080 Hb_002053_140--Hb_000141_080 Hb_003929_270 Hb_003929_270 Hb_002053_140--Hb_003929_270 Hb_001366_370 Hb_001366_370 Hb_002053_140--Hb_001366_370 Hb_012796_020 Hb_012796_020 Hb_002053_140--Hb_012796_020 Hb_001168_020 Hb_001168_020 Hb_000167_080--Hb_001168_020 Hb_154948_040 Hb_154948_040 Hb_000167_080--Hb_154948_040 Hb_086085_020 Hb_086085_020 Hb_000167_080--Hb_086085_020 Hb_001252_130 Hb_001252_130 Hb_000167_080--Hb_001252_130 Hb_001287_080 Hb_001287_080 Hb_000167_080--Hb_001287_080 Hb_001699_100--Hb_002053_140 Hb_000300_630 Hb_000300_630 Hb_001699_100--Hb_000300_630 Hb_001699_100--Hb_012796_020 Hb_000025_630 Hb_000025_630 Hb_001699_100--Hb_000025_630 Hb_007441_190 Hb_007441_190 Hb_001699_100--Hb_007441_190 Hb_000510_300 Hb_000510_300 Hb_000783_010--Hb_000510_300 Hb_000200_020 Hb_000200_020 Hb_000783_010--Hb_000200_020 Hb_000783_010--Hb_001366_370 Hb_000720_040 Hb_000720_040 Hb_000783_010--Hb_000720_040 Hb_011628_060 Hb_011628_060 Hb_000783_010--Hb_011628_060 Hb_000331_180 Hb_000331_180 Hb_000783_010--Hb_000331_180 Hb_001279_150 Hb_001279_150 Hb_005489_060--Hb_001279_150 Hb_002473_130 Hb_002473_130 Hb_005489_060--Hb_002473_130 Hb_002182_080 Hb_002182_080 Hb_005489_060--Hb_002182_080 Hb_002271_020 Hb_002271_020 Hb_005489_060--Hb_002271_020 Hb_000215_110 Hb_000215_110 Hb_005489_060--Hb_000215_110 Hb_005489_060--Hb_000783_010 Hb_082821_010 Hb_082821_010 Hb_001633_130--Hb_082821_010 Hb_090051_030 Hb_090051_030 Hb_001633_130--Hb_090051_030 Hb_000146_050 Hb_000146_050 Hb_001633_130--Hb_000146_050 Hb_006455_120 Hb_006455_120 Hb_001633_130--Hb_006455_120 Hb_001159_130 Hb_001159_130 Hb_001633_130--Hb_001159_130 Hb_003177_030 Hb_003177_030 Hb_001633_130--Hb_003177_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.4559 12.685 23.8101 40.8021 19.3357 36.3021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.9014 35.4199 23.6373 18.8457 13.1218

CAGE analysis