Hb_000167_080

Information

Type -
Description -
Location Contig167: 46697-49880
Sequence    

Annotation

kegg
ID rcu:RCOM_0721990
description hypothetical protein
nr
ID XP_012080963.1
description PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KF42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16158 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15401: 38733-49744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000167_080 0.0 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
2 Hb_000453_160 0.0770659255 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
3 Hb_001168_020 0.0863927356 - - PREDICTED: translation initiation factor eIF-2B subunit gamma [Jatropha curcas]
4 Hb_154948_040 0.0908686492 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
5 Hb_086085_020 0.0934864453 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
6 Hb_001252_130 0.0939714804 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
7 Hb_001287_080 0.0954254027 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001250_060 0.0957406996 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
9 Hb_001357_150 0.0960871483 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
10 Hb_000510_300 0.097483014 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
11 Hb_005489_060 0.1009987463 - - Anamorsin, putative [Ricinus communis]
12 Hb_002271_020 0.1014344002 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
13 Hb_000676_080 0.1017811259 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
14 Hb_000310_090 0.102081585 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
15 Hb_002053_140 0.1025106262 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
16 Hb_003633_030 0.1030088217 - - f-actin capping protein alpha, putative [Ricinus communis]
17 Hb_002289_080 0.1031416824 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
18 Hb_000783_010 0.1032207506 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
19 Hb_002518_210 0.10399207 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
20 Hb_033594_120 0.1058819183 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000167_080 Hb_000167_080 Hb_000453_160 Hb_000453_160 Hb_000167_080--Hb_000453_160 Hb_001168_020 Hb_001168_020 Hb_000167_080--Hb_001168_020 Hb_154948_040 Hb_154948_040 Hb_000167_080--Hb_154948_040 Hb_086085_020 Hb_086085_020 Hb_000167_080--Hb_086085_020 Hb_001252_130 Hb_001252_130 Hb_000167_080--Hb_001252_130 Hb_001287_080 Hb_001287_080 Hb_000167_080--Hb_001287_080 Hb_002053_140 Hb_002053_140 Hb_000453_160--Hb_002053_140 Hb_001699_100 Hb_001699_100 Hb_000453_160--Hb_001699_100 Hb_000783_010 Hb_000783_010 Hb_000453_160--Hb_000783_010 Hb_005489_060 Hb_005489_060 Hb_000453_160--Hb_005489_060 Hb_001633_130 Hb_001633_130 Hb_000453_160--Hb_001633_130 Hb_000310_090 Hb_000310_090 Hb_001168_020--Hb_000310_090 Hb_002289_080 Hb_002289_080 Hb_001168_020--Hb_002289_080 Hb_000696_330 Hb_000696_330 Hb_001168_020--Hb_000696_330 Hb_000078_120 Hb_000078_120 Hb_001168_020--Hb_000078_120 Hb_003777_320 Hb_003777_320 Hb_001168_020--Hb_003777_320 Hb_000002_380 Hb_000002_380 Hb_154948_040--Hb_000002_380 Hb_017895_040 Hb_017895_040 Hb_154948_040--Hb_017895_040 Hb_000390_300 Hb_000390_300 Hb_154948_040--Hb_000390_300 Hb_002105_100 Hb_002105_100 Hb_154948_040--Hb_002105_100 Hb_045003_010 Hb_045003_010 Hb_154948_040--Hb_045003_010 Hb_007878_010 Hb_007878_010 Hb_154948_040--Hb_007878_010 Hb_086085_020--Hb_000310_090 Hb_003929_270 Hb_003929_270 Hb_086085_020--Hb_003929_270 Hb_000141_080 Hb_000141_080 Hb_086085_020--Hb_000141_080 Hb_008970_030 Hb_008970_030 Hb_086085_020--Hb_008970_030 Hb_086085_020--Hb_002289_080 Hb_000768_210 Hb_000768_210 Hb_086085_020--Hb_000768_210 Hb_005496_140 Hb_005496_140 Hb_001252_130--Hb_005496_140 Hb_000081_160 Hb_000081_160 Hb_001252_130--Hb_000081_160 Hb_001971_010 Hb_001971_010 Hb_001252_130--Hb_001971_010 Hb_000599_250 Hb_000599_250 Hb_001252_130--Hb_000599_250 Hb_000215_110 Hb_000215_110 Hb_001252_130--Hb_000215_110 Hb_000054_090 Hb_000054_090 Hb_001252_130--Hb_000054_090 Hb_002271_020 Hb_002271_020 Hb_001287_080--Hb_002271_020 Hb_143398_010 Hb_143398_010 Hb_001287_080--Hb_143398_010 Hb_005291_030 Hb_005291_030 Hb_001287_080--Hb_005291_030 Hb_001357_150 Hb_001357_150 Hb_001287_080--Hb_001357_150 Hb_033594_120 Hb_033594_120 Hb_001287_080--Hb_033594_120 Hb_007451_010 Hb_007451_010 Hb_001287_080--Hb_007451_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.06295 3.50516 4.29171 11.2681 3.63376 8.94547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.01802 9.40515 4.38122 4.52237 4.64661

CAGE analysis