Hb_003777_320

Information

Type -
Description -
Location Contig3777: 390122-391726
Sequence    

Annotation

kegg
ID rcu:RCOM_0959780
description U3 small nucleolar RNA-associated protein, putative
nr
ID XP_012073957.1
description PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Jatropha curcas]
swissprot
ID O82266
description Protein SLOW WALKER 1 OS=Arabidopsis thaliana GN=SWA1 PE=2 SV=1
trembl
ID A0A067KXL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08356 PE=4 SV=1
Gene Ontology
ID GO:0005730
description u3 small nucleolar rna-associated protein 15 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38476: 390339-391109 , PASA_asmbl_38477: 391168-391944 , PASA_asmbl_38478: 391168-391962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_320 0.0 - - PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Jatropha curcas]
2 Hb_005188_080 0.081623625 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
3 Hb_001168_020 0.0820509427 - - PREDICTED: translation initiation factor eIF-2B subunit gamma [Jatropha curcas]
4 Hb_003847_030 0.0832469143 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
5 Hb_007881_030 0.0842997222 - - Protein YME1, putative [Ricinus communis]
6 Hb_000696_330 0.0844974397 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
7 Hb_000504_070 0.0886504832 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
8 Hb_152371_010 0.0915734085 - - RNA-binding KH domain-containing protein [Theobroma cacao]
9 Hb_028227_070 0.091736129 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
10 Hb_000329_340 0.0920775153 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010964_040 0.0947424887 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
12 Hb_000078_120 0.0954747539 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
13 Hb_001571_050 0.0960768921 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
14 Hb_010423_030 0.096100544 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
15 Hb_011386_010 0.0975202358 - - mitochondrial carrier protein, putative [Ricinus communis]
16 Hb_000192_080 0.0978323699 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
17 Hb_089032_030 0.0992512828 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
18 Hb_000614_250 0.0995284698 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
19 Hb_000477_060 0.1008557698 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
20 Hb_002289_080 0.1021949295 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]

Gene co-expression network

sample Hb_003777_320 Hb_003777_320 Hb_005188_080 Hb_005188_080 Hb_003777_320--Hb_005188_080 Hb_001168_020 Hb_001168_020 Hb_003777_320--Hb_001168_020 Hb_003847_030 Hb_003847_030 Hb_003777_320--Hb_003847_030 Hb_007881_030 Hb_007881_030 Hb_003777_320--Hb_007881_030 Hb_000696_330 Hb_000696_330 Hb_003777_320--Hb_000696_330 Hb_000504_070 Hb_000504_070 Hb_003777_320--Hb_000504_070 Hb_000015_040 Hb_000015_040 Hb_005188_080--Hb_000015_040 Hb_000680_160 Hb_000680_160 Hb_005188_080--Hb_000680_160 Hb_002078_350 Hb_002078_350 Hb_005188_080--Hb_002078_350 Hb_001545_170 Hb_001545_170 Hb_005188_080--Hb_001545_170 Hb_001579_220 Hb_001579_220 Hb_005188_080--Hb_001579_220 Hb_000645_090 Hb_000645_090 Hb_005188_080--Hb_000645_090 Hb_000310_090 Hb_000310_090 Hb_001168_020--Hb_000310_090 Hb_002289_080 Hb_002289_080 Hb_001168_020--Hb_002289_080 Hb_001168_020--Hb_000696_330 Hb_000078_120 Hb_000078_120 Hb_001168_020--Hb_000078_120 Hb_000167_080 Hb_000167_080 Hb_001168_020--Hb_000167_080 Hb_000327_180 Hb_000327_180 Hb_003847_030--Hb_000327_180 Hb_000049_210 Hb_000049_210 Hb_003847_030--Hb_000049_210 Hb_000614_250 Hb_000614_250 Hb_003847_030--Hb_000614_250 Hb_005054_110 Hb_005054_110 Hb_003847_030--Hb_005054_110 Hb_000497_300 Hb_000497_300 Hb_003847_030--Hb_000497_300 Hb_001014_030 Hb_001014_030 Hb_003847_030--Hb_001014_030 Hb_032225_010 Hb_032225_010 Hb_007881_030--Hb_032225_010 Hb_144528_010 Hb_144528_010 Hb_007881_030--Hb_144528_010 Hb_000635_250 Hb_000635_250 Hb_007881_030--Hb_000635_250 Hb_001538_130 Hb_001538_130 Hb_007881_030--Hb_001538_130 Hb_000092_170 Hb_000092_170 Hb_007881_030--Hb_000092_170 Hb_000696_330--Hb_000078_120 Hb_011386_010 Hb_011386_010 Hb_000696_330--Hb_011386_010 Hb_004143_060 Hb_004143_060 Hb_000696_330--Hb_004143_060 Hb_000696_330--Hb_002078_350 Hb_000331_260 Hb_000331_260 Hb_000696_330--Hb_000331_260 Hb_028227_070 Hb_028227_070 Hb_000504_070--Hb_028227_070 Hb_007416_120 Hb_007416_120 Hb_000504_070--Hb_007416_120 Hb_002534_120 Hb_002534_120 Hb_000504_070--Hb_002534_120 Hb_006452_100 Hb_006452_100 Hb_000504_070--Hb_006452_100 Hb_005914_170 Hb_005914_170 Hb_000504_070--Hb_005914_170 Hb_000175_540 Hb_000175_540 Hb_000504_070--Hb_000175_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.14984 8.40408 3.71511 12.3439 4.96394 13.6542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.68151 15.4386 11.5628 12.1417 10.6841

CAGE analysis