Hb_002534_120

Information

Type -
Description -
Location Contig2534: 77747-79765
Sequence    

Annotation

kegg
ID rcu:RCOM_1472010
description hypothetical protein
nr
ID XP_012080273.1
description PREDICTED: protein DCL, chloroplastic [Jatropha curcas]
swissprot
ID Q42463
description Protein DCL, chloroplastic OS=Solanum lycopersicum GN=DCL PE=2 SV=1
trembl
ID A0A067KG87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11631 PE=4 SV=1
Gene Ontology
ID GO:0005507
description protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26496: 77792-79784
cDNA
(Sanger)
(ID:Location)		 042_O12.ab1: 77994-79784

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002534_120 0.0 - - PREDICTED: protein DCL, chloroplastic [Jatropha curcas]
2 Hb_000504_070 0.0778439418 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
3 Hb_002232_360 0.0820307905 - - PREDICTED: proline iminopeptidase isoform X2 [Jatropha curcas]
4 Hb_001671_100 0.0831797343 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
5 Hb_000392_430 0.088426756 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
6 Hb_002271_010 0.0899168978 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
7 Hb_007416_120 0.0915534821 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
8 Hb_001314_050 0.0952272182 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
9 Hb_005914_170 0.0980010646 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
10 Hb_004781_010 0.1002041997 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
11 Hb_000210_120 0.1035290202 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
12 Hb_000739_300 0.1044569729 - - PREDICTED: uncharacterized protein LOC105643092 [Jatropha curcas]
13 Hb_000003_320 0.1062664048 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
14 Hb_000749_190 0.1064088556 - - PREDICTED: nucleolar GTP-binding protein 2 [Populus euphratica]
15 Hb_000312_080 0.1070500381 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]
16 Hb_000948_160 0.109214991 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
17 Hb_119530_010 0.1097586487 - - -
18 Hb_023001_040 0.110719023 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
19 Hb_000920_300 0.1110363781 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
20 Hb_002197_050 0.1112803583 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]

Gene co-expression network

sample Hb_002534_120 Hb_002534_120 Hb_000504_070 Hb_000504_070 Hb_002534_120--Hb_000504_070 Hb_002232_360 Hb_002232_360 Hb_002534_120--Hb_002232_360 Hb_001671_100 Hb_001671_100 Hb_002534_120--Hb_001671_100 Hb_000392_430 Hb_000392_430 Hb_002534_120--Hb_000392_430 Hb_002271_010 Hb_002271_010 Hb_002534_120--Hb_002271_010 Hb_007416_120 Hb_007416_120 Hb_002534_120--Hb_007416_120 Hb_028227_070 Hb_028227_070 Hb_000504_070--Hb_028227_070 Hb_000504_070--Hb_007416_120 Hb_006452_100 Hb_006452_100 Hb_000504_070--Hb_006452_100 Hb_005914_170 Hb_005914_170 Hb_000504_070--Hb_005914_170 Hb_000175_540 Hb_000175_540 Hb_000504_070--Hb_000175_540 Hb_002232_360--Hb_001671_100 Hb_000363_190 Hb_000363_190 Hb_002232_360--Hb_000363_190 Hb_001999_310 Hb_001999_310 Hb_002232_360--Hb_001999_310 Hb_029243_030 Hb_029243_030 Hb_002232_360--Hb_029243_030 Hb_002232_360--Hb_000392_430 Hb_001828_180 Hb_001828_180 Hb_002232_360--Hb_001828_180 Hb_001671_100--Hb_007416_120 Hb_001876_050 Hb_001876_050 Hb_001671_100--Hb_001876_050 Hb_001671_100--Hb_001999_310 Hb_001671_100--Hb_000392_430 Hb_001314_050 Hb_001314_050 Hb_001671_100--Hb_001314_050 Hb_000111_320 Hb_000111_320 Hb_000392_430--Hb_000111_320 Hb_000392_430--Hb_001314_050 Hb_002811_180 Hb_002811_180 Hb_000392_430--Hb_002811_180 Hb_000948_160 Hb_000948_160 Hb_000392_430--Hb_000948_160 Hb_000466_140 Hb_000466_140 Hb_000392_430--Hb_000466_140 Hb_002271_010--Hb_002232_360 Hb_002271_010--Hb_001671_100 Hb_002400_340 Hb_002400_340 Hb_002271_010--Hb_002400_340 Hb_111036_010 Hb_111036_010 Hb_002271_010--Hb_111036_010 Hb_000905_110 Hb_000905_110 Hb_002271_010--Hb_000905_110 Hb_007416_120--Hb_001876_050 Hb_004324_130 Hb_004324_130 Hb_007416_120--Hb_004324_130 Hb_007416_120--Hb_001999_310 Hb_000181_400 Hb_000181_400 Hb_007416_120--Hb_000181_400 Hb_000111_290 Hb_000111_290 Hb_007416_120--Hb_000111_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.6643 28.779 22.4117 35.1979 21.6384 36.817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.1824 59.7905 24.9901 66.9445 31.5684

CAGE analysis