Hb_000002_380

Information

Type -
Description -
Location Contig2: 556698-559561
Sequence    

Annotation

kegg
ID rcu:RCOM_0492420
description protein transporter, putative
nr
ID XP_012069792.1
description PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
swissprot
ID Q94CG2
description Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4
trembl
ID B9STJ5
description Protein transporter, putative OS=Ricinus communis GN=RCOM_0492420 PE=4 SV=1
Gene Ontology
ID GO:0005737
description bet1-like snare 1-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20106: 556790-558665 , PASA_asmbl_20107: 558697-559561
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_380 0.0 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
2 Hb_002105_100 0.0590339923 - - protein with unknown function [Ricinus communis]
3 Hb_003108_020 0.0600505998 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
4 Hb_154948_040 0.0667439011 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
5 Hb_000453_160 0.0801299882 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
6 Hb_000656_170 0.0818104064 - - lsm1, putative [Ricinus communis]
7 Hb_006573_020 0.0844019299 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
8 Hb_006693_020 0.08447282 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
9 Hb_003502_090 0.0850639759 - - ATP synthase subunit d, putative [Ricinus communis]
10 Hb_022318_010 0.0859182197 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007113_070 0.0884024965 - - protein with unknown function [Ricinus communis]
12 Hb_000005_090 0.0884746141 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
13 Hb_000317_390 0.0893943834 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
14 Hb_000390_300 0.0894510397 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
15 Hb_005045_060 0.0903195537 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
16 Hb_001057_040 0.0912173164 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
17 Hb_004032_010 0.0913680395 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
18 Hb_172632_100 0.0919629624 - - PREDICTED: reticulon-like protein B22 [Jatropha curcas]
19 Hb_000783_010 0.0920168977 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
20 Hb_007878_010 0.0926469567 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000002_380 Hb_000002_380 Hb_002105_100 Hb_002105_100 Hb_000002_380--Hb_002105_100 Hb_003108_020 Hb_003108_020 Hb_000002_380--Hb_003108_020 Hb_154948_040 Hb_154948_040 Hb_000002_380--Hb_154948_040 Hb_000453_160 Hb_000453_160 Hb_000002_380--Hb_000453_160 Hb_000656_170 Hb_000656_170 Hb_000002_380--Hb_000656_170 Hb_006573_020 Hb_006573_020 Hb_000002_380--Hb_006573_020 Hb_002105_100--Hb_154948_040 Hb_000005_090 Hb_000005_090 Hb_002105_100--Hb_000005_090 Hb_000805_240 Hb_000805_240 Hb_002105_100--Hb_000805_240 Hb_000390_300 Hb_000390_300 Hb_002105_100--Hb_000390_300 Hb_002171_060 Hb_002171_060 Hb_002105_100--Hb_002171_060 Hb_003502_090 Hb_003502_090 Hb_003108_020--Hb_003502_090 Hb_002182_080 Hb_002182_080 Hb_003108_020--Hb_002182_080 Hb_000479_190 Hb_000479_190 Hb_003108_020--Hb_000479_190 Hb_003108_020--Hb_000656_170 Hb_004032_010 Hb_004032_010 Hb_003108_020--Hb_004032_010 Hb_017895_040 Hb_017895_040 Hb_154948_040--Hb_017895_040 Hb_154948_040--Hb_000390_300 Hb_045003_010 Hb_045003_010 Hb_154948_040--Hb_045003_010 Hb_007878_010 Hb_007878_010 Hb_154948_040--Hb_007878_010 Hb_002053_140 Hb_002053_140 Hb_000453_160--Hb_002053_140 Hb_000167_080 Hb_000167_080 Hb_000453_160--Hb_000167_080 Hb_001699_100 Hb_001699_100 Hb_000453_160--Hb_001699_100 Hb_000783_010 Hb_000783_010 Hb_000453_160--Hb_000783_010 Hb_005489_060 Hb_005489_060 Hb_000453_160--Hb_005489_060 Hb_001633_130 Hb_001633_130 Hb_000453_160--Hb_001633_130 Hb_000656_170--Hb_004032_010 Hb_000102_020 Hb_000102_020 Hb_000656_170--Hb_000102_020 Hb_009051_030 Hb_009051_030 Hb_000656_170--Hb_009051_030 Hb_007441_040 Hb_007441_040 Hb_000656_170--Hb_007441_040 Hb_000656_170--Hb_000479_190 Hb_000808_190 Hb_000808_190 Hb_006573_020--Hb_000808_190 Hb_003494_050 Hb_003494_050 Hb_006573_020--Hb_003494_050 Hb_001057_040 Hb_001057_040 Hb_006573_020--Hb_001057_040 Hb_186982_040 Hb_186982_040 Hb_006573_020--Hb_186982_040 Hb_006573_020--Hb_000005_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94474 1.50979 3.09235 5.8591 3.05715 4.30151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.19632 7.6425 3.81838 3.34117 1.67917

CAGE analysis