Hb_006573_020

Information

Type -
Description -
Location Contig6573: 8818-11343
Sequence    

Annotation

kegg
ID brp:103834856
description 40S ribosomal protein S10-1-like
nr
ID XP_012090181.1
description PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
swissprot
ID Q9SW09
description 40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1
trembl
ID A0A067JHI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26054 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52801: 8799-11328 , PASA_asmbl_52803: 10376-11131
cDNA
(Sanger)
(ID:Location)		 002_F20.ab1: 8863-11328 , 016_L12.ab1: 8906-11338 , 039_E15.ab1: 9025-11327

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_020 0.0 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
2 Hb_000808_190 0.0664393405 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
3 Hb_003494_050 0.0756122428 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
4 Hb_001057_040 0.0830383361 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
5 Hb_000002_380 0.0844019299 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
6 Hb_186982_040 0.0880558391 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
7 Hb_000005_090 0.0909330155 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
8 Hb_005667_040 0.0928088705 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
9 Hb_004157_030 0.0933261884 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
10 Hb_001814_050 0.0943333814 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_004767_080 0.0946311344 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
12 Hb_007928_030 0.0949023784 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
13 Hb_006915_040 0.0956598011 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
14 Hb_154948_040 0.0958455788 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
15 Hb_005305_150 0.0965658212 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
16 Hb_000735_090 0.0969605228 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
17 Hb_001728_030 0.0973724812 - - 60S ribosomal protein L15 [Populus trichocarpa]
18 Hb_000849_130 0.0974926651 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
19 Hb_001863_430 0.0976793627 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
20 Hb_000656_170 0.0978467296 - - lsm1, putative [Ricinus communis]

Gene co-expression network

sample Hb_006573_020 Hb_006573_020 Hb_000808_190 Hb_000808_190 Hb_006573_020--Hb_000808_190 Hb_003494_050 Hb_003494_050 Hb_006573_020--Hb_003494_050 Hb_001057_040 Hb_001057_040 Hb_006573_020--Hb_001057_040 Hb_000002_380 Hb_000002_380 Hb_006573_020--Hb_000002_380 Hb_186982_040 Hb_186982_040 Hb_006573_020--Hb_186982_040 Hb_000005_090 Hb_000005_090 Hb_006573_020--Hb_000005_090 Hb_001353_010 Hb_001353_010 Hb_000808_190--Hb_001353_010 Hb_000028_350 Hb_000028_350 Hb_000808_190--Hb_000028_350 Hb_002000_140 Hb_002000_140 Hb_000808_190--Hb_002000_140 Hb_005307_050 Hb_005307_050 Hb_000808_190--Hb_005307_050 Hb_002303_060 Hb_002303_060 Hb_000808_190--Hb_002303_060 Hb_000735_090 Hb_000735_090 Hb_003494_050--Hb_000735_090 Hb_007747_050 Hb_007747_050 Hb_003494_050--Hb_007747_050 Hb_001373_060 Hb_001373_060 Hb_003494_050--Hb_001373_060 Hb_005269_080 Hb_005269_080 Hb_003494_050--Hb_005269_080 Hb_002811_170 Hb_002811_170 Hb_003494_050--Hb_002811_170 Hb_000701_100 Hb_000701_100 Hb_001057_040--Hb_000701_100 Hb_009051_030 Hb_009051_030 Hb_001057_040--Hb_009051_030 Hb_009615_070 Hb_009615_070 Hb_001057_040--Hb_009615_070 Hb_018124_010 Hb_018124_010 Hb_001057_040--Hb_018124_010 Hb_008695_050 Hb_008695_050 Hb_001057_040--Hb_008695_050 Hb_000406_080 Hb_000406_080 Hb_001057_040--Hb_000406_080 Hb_002105_100 Hb_002105_100 Hb_000002_380--Hb_002105_100 Hb_003108_020 Hb_003108_020 Hb_000002_380--Hb_003108_020 Hb_154948_040 Hb_154948_040 Hb_000002_380--Hb_154948_040 Hb_000453_160 Hb_000453_160 Hb_000002_380--Hb_000453_160 Hb_000656_170 Hb_000656_170 Hb_000002_380--Hb_000656_170 Hb_000136_350 Hb_000136_350 Hb_186982_040--Hb_000136_350 Hb_003098_020 Hb_003098_020 Hb_186982_040--Hb_003098_020 Hb_000538_120 Hb_000538_120 Hb_186982_040--Hb_000538_120 Hb_007928_030 Hb_007928_030 Hb_186982_040--Hb_007928_030 Hb_186982_040--Hb_005307_050 Hb_004109_340 Hb_004109_340 Hb_186982_040--Hb_004109_340 Hb_000001_060 Hb_000001_060 Hb_000005_090--Hb_000001_060 Hb_004108_070 Hb_004108_070 Hb_000005_090--Hb_004108_070 Hb_000005_090--Hb_002105_100 Hb_006693_020 Hb_006693_020 Hb_000005_090--Hb_006693_020 Hb_004127_020 Hb_004127_020 Hb_000005_090--Hb_004127_020 Hb_004899_370 Hb_004899_370 Hb_000005_090--Hb_004899_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.2646 34.8227 72.1475 145.733 50.6812 111.832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
129.043 247.445 86.2521 104.079 61.8963

CAGE analysis