Hb_003108_020

Information

Type -
Description -
Location Contig3108: 49918-57939
Sequence    

Annotation

kegg
ID rcu:RCOM_0686940
description hypothetical protein
nr
ID XP_012074110.1
description PREDICTED: transmembrane protein 18 [Jatropha curcas]
swissprot
ID Q641M3
description Transmembrane protein 18 OS=Danio rerio GN=tmem18 PE=2 SV=1
trembl
ID A0A067KMY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09773 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32917: 55314-57834 , PASA_asmbl_32918: 55314-57856
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003108_020 0.0 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
2 Hb_000002_380 0.0600505998 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
3 Hb_003502_090 0.0602354854 - - ATP synthase subunit d, putative [Ricinus communis]
4 Hb_002182_080 0.0653278887 - - 3-5 exonuclease, putative [Ricinus communis]
5 Hb_000479_190 0.0671481344 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000656_170 0.0676248785 - - lsm1, putative [Ricinus communis]
7 Hb_004032_010 0.0702957465 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
8 Hb_003605_090 0.0727558838 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
9 Hb_092337_010 0.0771368218 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
10 Hb_000363_360 0.0830679458 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
11 Hb_000477_060 0.0845802819 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
12 Hb_001279_150 0.085545683 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
13 Hb_001584_190 0.0863070369 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
14 Hb_000406_080 0.0866088747 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
15 Hb_000221_160 0.0871348969 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
16 Hb_002375_070 0.0875112623 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012799_160 0.0875742853 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
18 Hb_000417_040 0.0877099599 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
19 Hb_000453_160 0.0881643797 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
20 Hb_011344_210 0.0882353322 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]

Gene co-expression network

sample Hb_003108_020 Hb_003108_020 Hb_000002_380 Hb_000002_380 Hb_003108_020--Hb_000002_380 Hb_003502_090 Hb_003502_090 Hb_003108_020--Hb_003502_090 Hb_002182_080 Hb_002182_080 Hb_003108_020--Hb_002182_080 Hb_000479_190 Hb_000479_190 Hb_003108_020--Hb_000479_190 Hb_000656_170 Hb_000656_170 Hb_003108_020--Hb_000656_170 Hb_004032_010 Hb_004032_010 Hb_003108_020--Hb_004032_010 Hb_002105_100 Hb_002105_100 Hb_000002_380--Hb_002105_100 Hb_154948_040 Hb_154948_040 Hb_000002_380--Hb_154948_040 Hb_000453_160 Hb_000453_160 Hb_000002_380--Hb_000453_160 Hb_000002_380--Hb_000656_170 Hb_006573_020 Hb_006573_020 Hb_000002_380--Hb_006573_020 Hb_003502_090--Hb_000479_190 Hb_001234_100 Hb_001234_100 Hb_003502_090--Hb_001234_100 Hb_001268_050 Hb_001268_050 Hb_003502_090--Hb_001268_050 Hb_003605_090 Hb_003605_090 Hb_003502_090--Hb_003605_090 Hb_003502_090--Hb_154948_040 Hb_001279_150 Hb_001279_150 Hb_002182_080--Hb_001279_150 Hb_002835_080 Hb_002835_080 Hb_002182_080--Hb_002835_080 Hb_000215_110 Hb_000215_110 Hb_002182_080--Hb_000215_110 Hb_019280_040 Hb_019280_040 Hb_002182_080--Hb_019280_040 Hb_008092_040 Hb_008092_040 Hb_002182_080--Hb_008092_040 Hb_001584_190 Hb_001584_190 Hb_000479_190--Hb_001584_190 Hb_000985_060 Hb_000985_060 Hb_000479_190--Hb_000985_060 Hb_001205_150 Hb_001205_150 Hb_000479_190--Hb_001205_150 Hb_000363_360 Hb_000363_360 Hb_000479_190--Hb_000363_360 Hb_000656_170--Hb_004032_010 Hb_000102_020 Hb_000102_020 Hb_000656_170--Hb_000102_020 Hb_009051_030 Hb_009051_030 Hb_000656_170--Hb_009051_030 Hb_007441_040 Hb_007441_040 Hb_000656_170--Hb_007441_040 Hb_000656_170--Hb_000479_190 Hb_002226_070 Hb_002226_070 Hb_004032_010--Hb_002226_070 Hb_033834_040 Hb_033834_040 Hb_004032_010--Hb_033834_040 Hb_000690_180 Hb_000690_180 Hb_004032_010--Hb_000690_180 Hb_005045_060 Hb_005045_060 Hb_004032_010--Hb_005045_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8584 8.58985 10.8929 24.9287 15.6737 23.5463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6744 33.408 22.9193 17.0485 9.27285

CAGE analysis