Hb_008092_040

Information

Type -
Description -
Location Contig8092: 56453-61345
Sequence    

Annotation

kegg
ID vvi:100259318
description DNA-directed RNA polymerases II and IV subunit 5A
nr
ID XP_012080620.1
description PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Jatropha curcas]
swissprot
ID O81098
description DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana GN=NRPB5A PE=1 SV=1
trembl
ID A0A067K3V6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13730 PE=3 SV=1
Gene Ontology
ID GO:0000418
description dna-directed rna polymerases ii and iv subunit 5a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59181: 51907-55987 , PASA_asmbl_59182: 51907-55592 , PASA_asmbl_59183: 56849-61329
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008092_040 0.0 - - PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Jatropha curcas]
2 Hb_002182_080 0.0632886919 - - 3-5 exonuclease, putative [Ricinus communis]
3 Hb_000215_110 0.0735864937 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
4 Hb_143398_010 0.0759741116 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
5 Hb_005357_080 0.0770769924 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
6 Hb_007416_280 0.0797338305 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002835_080 0.0798673527 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
8 Hb_005539_220 0.0836247294 - - spermidine synthase 1, putative [Ricinus communis]
9 Hb_035398_020 0.0840671081 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
10 Hb_001142_030 0.0859957429 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
11 Hb_001133_120 0.0871684261 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
12 Hb_009557_070 0.0871948413 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001252_130 0.0880583581 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
14 Hb_019280_040 0.0881271162 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_003092_040 0.0883053983 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
16 Hb_003126_050 0.0889556365 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
17 Hb_001638_170 0.0898152421 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
18 Hb_001287_080 0.0900715201 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000416_040 0.090335713 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
20 Hb_000580_180 0.0909410119 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008092_040 Hb_008092_040 Hb_002182_080 Hb_002182_080 Hb_008092_040--Hb_002182_080 Hb_000215_110 Hb_000215_110 Hb_008092_040--Hb_000215_110 Hb_143398_010 Hb_143398_010 Hb_008092_040--Hb_143398_010 Hb_005357_080 Hb_005357_080 Hb_008092_040--Hb_005357_080 Hb_007416_280 Hb_007416_280 Hb_008092_040--Hb_007416_280 Hb_002835_080 Hb_002835_080 Hb_008092_040--Hb_002835_080 Hb_001279_150 Hb_001279_150 Hb_002182_080--Hb_001279_150 Hb_002182_080--Hb_002835_080 Hb_002182_080--Hb_000215_110 Hb_019280_040 Hb_019280_040 Hb_002182_080--Hb_019280_040 Hb_003108_020 Hb_003108_020 Hb_002182_080--Hb_003108_020 Hb_002303_070 Hb_002303_070 Hb_000215_110--Hb_002303_070 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_003226_140 Hb_003226_140 Hb_000215_110--Hb_003226_140 Hb_000215_110--Hb_001279_150 Hb_000331_260 Hb_000331_260 Hb_000215_110--Hb_000331_260 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180 Hb_002271_020 Hb_002271_020 Hb_143398_010--Hb_002271_020 Hb_010180_010 Hb_010180_010 Hb_143398_010--Hb_010180_010 Hb_009557_070 Hb_009557_070 Hb_143398_010--Hb_009557_070 Hb_002473_130 Hb_002473_130 Hb_143398_010--Hb_002473_130 Hb_000045_090 Hb_000045_090 Hb_143398_010--Hb_000045_090 Hb_000329_030 Hb_000329_030 Hb_143398_010--Hb_000329_030 Hb_000019_030 Hb_000019_030 Hb_005357_080--Hb_000019_030 Hb_000618_040 Hb_000618_040 Hb_005357_080--Hb_000618_040 Hb_005357_080--Hb_002303_070 Hb_005357_080--Hb_000215_110 Hb_003665_060 Hb_003665_060 Hb_005357_080--Hb_003665_060 Hb_005357_080--Hb_003226_140 Hb_003092_040 Hb_003092_040 Hb_007416_280--Hb_003092_040 Hb_004032_150 Hb_004032_150 Hb_007416_280--Hb_004032_150 Hb_002026_180 Hb_002026_180 Hb_007416_280--Hb_002026_180 Hb_001489_150 Hb_001489_150 Hb_007416_280--Hb_001489_150 Hb_007416_280--Hb_019280_040 Hb_007416_280--Hb_000618_040 Hb_002835_080--Hb_019280_040 Hb_148644_010 Hb_148644_010 Hb_002835_080--Hb_148644_010 Hb_000010_330 Hb_000010_330 Hb_002835_080--Hb_000010_330 Hb_000959_260 Hb_000959_260 Hb_002835_080--Hb_000959_260 Hb_007691_030 Hb_007691_030 Hb_002835_080--Hb_007691_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.4192 32.7863 41.9775 57.184 33.3479 77.6155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.0017 81.9242 57.9503 41.4495 28.3338

CAGE analysis