Hb_009557_070

Information

Type -
Description -
Location Contig9557: 57097-61878
Sequence    

Annotation

kegg
ID rcu:RCOM_1171880
description hypothetical protein
nr
ID XP_002517843.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVS4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1171880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63534: 57451-61707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009557_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000329_030 0.055425524 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
3 Hb_000045_090 0.0581279353 - - PREDICTED: syntaxin-31 [Jatropha curcas]
4 Hb_143398_010 0.05866523 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
5 Hb_007416_280 0.0653559274 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003175_010 0.0656802808 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
7 Hb_003929_250 0.0660786666 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
8 Hb_001936_080 0.0688956423 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
9 Hb_012008_020 0.0689956621 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
10 Hb_003001_120 0.0703039859 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
11 Hb_096563_010 0.0704156936 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
12 Hb_002391_300 0.0704543818 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
13 Hb_001358_030 0.0706636887 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
14 Hb_003766_040 0.0712941029 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_003126_050 0.0713858424 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
16 Hb_000103_560 0.0720485908 - - ADP-ribosylation factor, putative [Ricinus communis]
17 Hb_000926_280 0.0721848657 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
18 Hb_011689_080 0.0738678491 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
19 Hb_003030_070 0.0745829495 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
20 Hb_002835_080 0.0747041374 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_009557_070 Hb_009557_070 Hb_000329_030 Hb_000329_030 Hb_009557_070--Hb_000329_030 Hb_000045_090 Hb_000045_090 Hb_009557_070--Hb_000045_090 Hb_143398_010 Hb_143398_010 Hb_009557_070--Hb_143398_010 Hb_007416_280 Hb_007416_280 Hb_009557_070--Hb_007416_280 Hb_003175_010 Hb_003175_010 Hb_009557_070--Hb_003175_010 Hb_003929_250 Hb_003929_250 Hb_009557_070--Hb_003929_250 Hb_002774_060 Hb_002774_060 Hb_000329_030--Hb_002774_060 Hb_000656_040 Hb_000656_040 Hb_000329_030--Hb_000656_040 Hb_000329_030--Hb_000045_090 Hb_000329_030--Hb_143398_010 Hb_000579_140 Hb_000579_140 Hb_000329_030--Hb_000579_140 Hb_000045_090--Hb_002774_060 Hb_004545_060 Hb_004545_060 Hb_000045_090--Hb_004545_060 Hb_000045_090--Hb_143398_010 Hb_005686_060 Hb_005686_060 Hb_000045_090--Hb_005686_060 Hb_002271_020 Hb_002271_020 Hb_143398_010--Hb_002271_020 Hb_010180_010 Hb_010180_010 Hb_143398_010--Hb_010180_010 Hb_002473_130 Hb_002473_130 Hb_143398_010--Hb_002473_130 Hb_003092_040 Hb_003092_040 Hb_007416_280--Hb_003092_040 Hb_004032_150 Hb_004032_150 Hb_007416_280--Hb_004032_150 Hb_002026_180 Hb_002026_180 Hb_007416_280--Hb_002026_180 Hb_001489_150 Hb_001489_150 Hb_007416_280--Hb_001489_150 Hb_019280_040 Hb_019280_040 Hb_007416_280--Hb_019280_040 Hb_000618_040 Hb_000618_040 Hb_007416_280--Hb_000618_040 Hb_000808_270 Hb_000808_270 Hb_003175_010--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_003175_010--Hb_000926_280 Hb_003175_010--Hb_019280_040 Hb_000030_300 Hb_000030_300 Hb_003175_010--Hb_000030_300 Hb_003766_040 Hb_003766_040 Hb_003175_010--Hb_003766_040 Hb_048937_040 Hb_048937_040 Hb_003175_010--Hb_048937_040 Hb_000340_300 Hb_000340_300 Hb_003929_250--Hb_000340_300 Hb_000920_180 Hb_000920_180 Hb_003929_250--Hb_000920_180 Hb_000056_200 Hb_000056_200 Hb_003929_250--Hb_000056_200 Hb_096563_010 Hb_096563_010 Hb_003929_250--Hb_096563_010 Hb_000465_460 Hb_000465_460 Hb_003929_250--Hb_000465_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0959 6.03374 8.38064 9.35958 11.8257 19.308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8237 16.7586 11.8222 7.79979 4.93862

CAGE analysis