Hb_002026_180

Information

Type -
Description -
Location Contig2026: 163620-167726
Sequence    

Annotation

kegg
ID rcu:RCOM_1686840
description mitochondrial carrier protein, putative
nr
ID XP_012086897.1
description PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
swissprot
ID F4HT41
description Probable S-adenosylmethionine carrier 2, chloroplastic OS=Arabidopsis thaliana GN=SAMC2 PE=2 SV=1
trembl
ID A0A067K0V5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20590 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20647: 162899-164282 , PASA_asmbl_20648: 164840-165028 , PASA_asmbl_20649: 165088-165830 , PASA_asmbl_20650: 166454-166672
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002026_180 0.0 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
2 Hb_000030_300 0.0477468973 - - Thioredoxin, putative [Ricinus communis]
3 Hb_002016_110 0.0561160848 - - transducin family protein [Populus trichocarpa]
4 Hb_007416_280 0.0607915157 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000571_120 0.06320411 - - importin beta-1, putative [Ricinus communis]
6 Hb_003766_040 0.0674061247 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_189003_080 0.0677717354 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
8 Hb_061090_010 0.0678087204 - - RAN BINDING protein 1 [Populus trichocarpa]
9 Hb_005663_060 0.0690936264 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
10 Hb_003092_040 0.0691223479 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
11 Hb_007441_120 0.0695188637 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
12 Hb_000953_020 0.0701278892 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
13 Hb_004837_040 0.0709258355 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
14 Hb_002496_030 0.0714327519 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
15 Hb_003464_060 0.0715621864 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
16 Hb_000805_020 0.0719433305 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
17 Hb_003615_010 0.0724549236 - - 60S ribosomal protein L8, putative [Ricinus communis]
18 Hb_000629_010 0.0728701318 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
19 Hb_000062_240 0.0730808335 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
20 Hb_000510_130 0.0734961222 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002026_180 Hb_002026_180 Hb_000030_300 Hb_000030_300 Hb_002026_180--Hb_000030_300 Hb_002016_110 Hb_002016_110 Hb_002026_180--Hb_002016_110 Hb_007416_280 Hb_007416_280 Hb_002026_180--Hb_007416_280 Hb_000571_120 Hb_000571_120 Hb_002026_180--Hb_000571_120 Hb_003766_040 Hb_003766_040 Hb_002026_180--Hb_003766_040 Hb_189003_080 Hb_189003_080 Hb_002026_180--Hb_189003_080 Hb_002496_030 Hb_002496_030 Hb_000030_300--Hb_002496_030 Hb_003175_010 Hb_003175_010 Hb_000030_300--Hb_003175_010 Hb_001242_060 Hb_001242_060 Hb_000030_300--Hb_001242_060 Hb_000808_270 Hb_000808_270 Hb_000030_300--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_000030_300--Hb_000926_280 Hb_006915_050 Hb_006915_050 Hb_002016_110--Hb_006915_050 Hb_007441_120 Hb_007441_120 Hb_002016_110--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_002016_110--Hb_005663_060 Hb_002016_110--Hb_189003_080 Hb_002016_110--Hb_000030_300 Hb_003092_040 Hb_003092_040 Hb_007416_280--Hb_003092_040 Hb_004032_150 Hb_004032_150 Hb_007416_280--Hb_004032_150 Hb_001489_150 Hb_001489_150 Hb_007416_280--Hb_001489_150 Hb_019280_040 Hb_019280_040 Hb_007416_280--Hb_019280_040 Hb_000618_040 Hb_000618_040 Hb_007416_280--Hb_000618_040 Hb_002137_020 Hb_002137_020 Hb_000571_120--Hb_002137_020 Hb_007441_200 Hb_007441_200 Hb_000571_120--Hb_007441_200 Hb_000953_020 Hb_000953_020 Hb_000571_120--Hb_000953_020 Hb_000768_040 Hb_000768_040 Hb_000571_120--Hb_000768_040 Hb_000805_020 Hb_000805_020 Hb_000571_120--Hb_000805_020 Hb_003766_040--Hb_003175_010 Hb_003766_040--Hb_000808_270 Hb_003766_040--Hb_000926_280 Hb_003766_040--Hb_001489_150 Hb_003766_040--Hb_007416_280 Hb_000567_260 Hb_000567_260 Hb_189003_080--Hb_000567_260 Hb_008695_210 Hb_008695_210 Hb_189003_080--Hb_008695_210 Hb_001671_020 Hb_001671_020 Hb_189003_080--Hb_001671_020 Hb_001248_130 Hb_001248_130 Hb_189003_080--Hb_001248_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.26121 1.52535 1.00171 1.11467 1.68814 3.0838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.50369 2.37499 2.9998 1.64123 0.932896

CAGE analysis