Hb_001248_130

Information

Type transcription factor
Description TF Family: C3H
Location Contig1248: 132491-139088
Sequence    

Annotation

kegg
ID tcc:TCM_005895
description Zinc finger family protein isoform 1
nr
ID XP_012065543.1
description PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
swissprot
ID E0X9N4
description Zinc finger CCCH domain-containing protein 69 OS=Arabidopsis thaliana GN=At3g63550 PE=3 SV=1
trembl
ID A0A067L4R4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16748 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger ccch domain-containing protein 69 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07523: 132652-139089 , PASA_asmbl_07524: 132652-139089 , PASA_asmbl_07525: 135205-136806 , PASA_asmbl_07526: 136587-136768
cDNA
(Sanger)
(ID:Location)		 005_H22.ab1: 137438-139032 , 018_O12.ab1: 137643-139089 , 029_J19.ab1: 137656-139089

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001248_130 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
2 Hb_020178_070 0.0645967868 - - Protein Z, putative [Ricinus communis]
3 Hb_000567_260 0.0662203998 - - BnaA09g41440D [Brassica napus]
4 Hb_189003_080 0.0679571368 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
5 Hb_007441_120 0.0703610264 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
6 Hb_000207_250 0.0713339523 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
7 Hb_002016_110 0.0726315947 - - transducin family protein [Populus trichocarpa]
8 Hb_001051_100 0.0752220981 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
9 Hb_183086_060 0.0752733009 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
10 Hb_011918_080 0.0758688737 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
11 Hb_000409_020 0.0781595594 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
12 Hb_001329_300 0.0783359908 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
13 Hb_000754_060 0.0792981438 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
14 Hb_001604_010 0.0796671399 - - 14-3-3 protein, putative [Ricinus communis]
15 Hb_000445_420 0.0798846435 - - protein transporter, putative [Ricinus communis]
16 Hb_028872_140 0.0805538632 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
17 Hb_000041_050 0.0806199288 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
18 Hb_002835_410 0.0806934996 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
19 Hb_006915_050 0.0809571617 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
20 Hb_002811_360 0.0814098291 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]

Gene co-expression network

sample Hb_001248_130 Hb_001248_130 Hb_020178_070 Hb_020178_070 Hb_001248_130--Hb_020178_070 Hb_000567_260 Hb_000567_260 Hb_001248_130--Hb_000567_260 Hb_189003_080 Hb_189003_080 Hb_001248_130--Hb_189003_080 Hb_007441_120 Hb_007441_120 Hb_001248_130--Hb_007441_120 Hb_000207_250 Hb_000207_250 Hb_001248_130--Hb_000207_250 Hb_002016_110 Hb_002016_110 Hb_001248_130--Hb_002016_110 Hb_020178_070--Hb_000567_260 Hb_001671_020 Hb_001671_020 Hb_020178_070--Hb_001671_020 Hb_001881_020 Hb_001881_020 Hb_020178_070--Hb_001881_020 Hb_021650_030 Hb_021650_030 Hb_020178_070--Hb_021650_030 Hb_002411_200 Hb_002411_200 Hb_020178_070--Hb_002411_200 Hb_000567_260--Hb_001671_020 Hb_000614_230 Hb_000614_230 Hb_000567_260--Hb_000614_230 Hb_001329_300 Hb_001329_300 Hb_000567_260--Hb_001329_300 Hb_000567_260--Hb_189003_080 Hb_055062_030 Hb_055062_030 Hb_000567_260--Hb_055062_030 Hb_008695_210 Hb_008695_210 Hb_189003_080--Hb_008695_210 Hb_189003_080--Hb_002016_110 Hb_189003_080--Hb_001671_020 Hb_002026_180 Hb_002026_180 Hb_189003_080--Hb_002026_180 Hb_005663_060 Hb_005663_060 Hb_007441_120--Hb_005663_060 Hb_007441_120--Hb_002016_110 Hb_028872_140 Hb_028872_140 Hb_007441_120--Hb_028872_140 Hb_000445_420 Hb_000445_420 Hb_007441_120--Hb_000445_420 Hb_004055_030 Hb_004055_030 Hb_007441_120--Hb_004055_030 Hb_006922_100 Hb_006922_100 Hb_007441_120--Hb_006922_100 Hb_004976_030 Hb_004976_030 Hb_000207_250--Hb_004976_030 Hb_000898_040 Hb_000898_040 Hb_000207_250--Hb_000898_040 Hb_000207_250--Hb_189003_080 Hb_000409_020 Hb_000409_020 Hb_000207_250--Hb_000409_020 Hb_000907_080 Hb_000907_080 Hb_000207_250--Hb_000907_080 Hb_006915_050 Hb_006915_050 Hb_002016_110--Hb_006915_050 Hb_002016_110--Hb_002026_180 Hb_002016_110--Hb_005663_060 Hb_000030_300 Hb_000030_300 Hb_002016_110--Hb_000030_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.296 22.4122 14.8172 25.9211 45.8939 54.0835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.9294 43.398 74.3486 28.7526 13.3561

CAGE analysis