Hb_000445_420

Information

Type -
Description -
Location Contig445: 493107-506347
Sequence    

Annotation

kegg
ID rcu:RCOM_0560040
description protein transporter, putative
nr
ID XP_002520270.1
description protein transporter, putative [Ricinus communis]
swissprot
ID Q68FJ8
description TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1
trembl
ID B9S2Q1
description Protein transporter, putative OS=Ricinus communis GN=RCOM_0560040 PE=4 SV=1
Gene Ontology
ID GO:0005622
description target of myb protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42923: 493120-505627 , PASA_asmbl_42925: 501432-501611
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_420 0.0 - - protein transporter, putative [Ricinus communis]
2 Hb_007441_120 0.064473169 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
3 Hb_005663_060 0.067337817 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
4 Hb_002016_110 0.06905119 - - transducin family protein [Populus trichocarpa]
5 Hb_004055_030 0.0694245589 - - casein kinase, putative [Ricinus communis]
6 Hb_006922_100 0.0710254001 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
7 Hb_010931_120 0.0724476162 - - myosin heavy chain-related family protein [Populus trichocarpa]
8 Hb_002026_180 0.0744979731 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
9 Hb_003092_040 0.0759211304 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
10 Hb_001248_130 0.0798846435 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
11 Hb_012022_030 0.0825550884 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
12 Hb_000571_120 0.0835401181 - - importin beta-1, putative [Ricinus communis]
13 Hb_007416_280 0.0845279618 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006915_050 0.084653728 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
15 Hb_000041_050 0.085829613 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
16 Hb_000679_010 0.0862057956 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
17 Hb_000656_110 0.0863034133 - - nucleolysin tia-1, putative [Ricinus communis]
18 Hb_001818_090 0.0863734337 - - conserved hypothetical protein [Ricinus communis]
19 Hb_093084_050 0.0868465551 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
20 Hb_032202_190 0.0872759343 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]

Gene co-expression network

sample Hb_000445_420 Hb_000445_420 Hb_007441_120 Hb_007441_120 Hb_000445_420--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_000445_420--Hb_005663_060 Hb_002016_110 Hb_002016_110 Hb_000445_420--Hb_002016_110 Hb_004055_030 Hb_004055_030 Hb_000445_420--Hb_004055_030 Hb_006922_100 Hb_006922_100 Hb_000445_420--Hb_006922_100 Hb_010931_120 Hb_010931_120 Hb_000445_420--Hb_010931_120 Hb_007441_120--Hb_005663_060 Hb_007441_120--Hb_002016_110 Hb_028872_140 Hb_028872_140 Hb_007441_120--Hb_028872_140 Hb_007441_120--Hb_004055_030 Hb_007441_120--Hb_006922_100 Hb_003092_040 Hb_003092_040 Hb_005663_060--Hb_003092_040 Hb_032202_190 Hb_032202_190 Hb_005663_060--Hb_032202_190 Hb_005663_060--Hb_006922_100 Hb_005663_060--Hb_002016_110 Hb_000409_020 Hb_000409_020 Hb_005663_060--Hb_000409_020 Hb_006915_050 Hb_006915_050 Hb_002016_110--Hb_006915_050 Hb_002026_180 Hb_002026_180 Hb_002016_110--Hb_002026_180 Hb_189003_080 Hb_189003_080 Hb_002016_110--Hb_189003_080 Hb_000030_300 Hb_000030_300 Hb_002016_110--Hb_000030_300 Hb_004055_030--Hb_006922_100 Hb_001124_160 Hb_001124_160 Hb_004055_030--Hb_001124_160 Hb_003813_130 Hb_003813_130 Hb_004055_030--Hb_003813_130 Hb_001199_020 Hb_001199_020 Hb_004055_030--Hb_001199_020 Hb_000020_190 Hb_000020_190 Hb_006922_100--Hb_000020_190 Hb_001862_190 Hb_001862_190 Hb_006922_100--Hb_001862_190 Hb_006922_100--Hb_001199_020 Hb_010931_120--Hb_004055_030 Hb_011671_430 Hb_011671_430 Hb_010931_120--Hb_011671_430 Hb_005993_020 Hb_005993_020 Hb_010931_120--Hb_005993_020 Hb_002131_020 Hb_002131_020 Hb_010931_120--Hb_002131_020 Hb_000260_220 Hb_000260_220 Hb_010931_120--Hb_000260_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.6124 29.0736 21.0785 28.8673 35.1286 51.0259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.236 40.1889 63.9599 39.2021 19.6499

CAGE analysis