Hb_004055_030

Information

Type -
Description -
Location Contig4055: 21669-25573
Sequence    

Annotation

kegg
ID rcu:RCOM_0654970
description casein kinase, putative
nr
ID XP_002521378.1
description casein kinase, putative [Ricinus communis]
swissprot
ID P42158
description Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2
trembl
ID B9S5V9
description Casein kinase, putative OS=Ricinus communis GN=RCOM_0654970 PE=3 SV=1
Gene Ontology
ID GO:0004674
description casein kinase i isoform delta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40207: 21788-22915 , PASA_asmbl_40209: 23139-23503 , PASA_asmbl_40210: 24087-25575
cDNA
(Sanger)
(ID:Location)		 038_C08.ab1: 24087-25558 , 046_O22.ab1: 24195-25575

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004055_030 0.0 - - casein kinase, putative [Ricinus communis]
2 Hb_006922_100 0.0626016739 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
3 Hb_007441_120 0.0647105742 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
4 Hb_001124_160 0.0683777725 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
5 Hb_003813_130 0.0693748619 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
6 Hb_000445_420 0.0694245589 - - protein transporter, putative [Ricinus communis]
7 Hb_001199_020 0.0698951103 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
8 Hb_010931_120 0.0699256037 - - myosin heavy chain-related family protein [Populus trichocarpa]
9 Hb_000058_100 0.0700374341 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
10 Hb_106724_020 0.0706317816 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
11 Hb_000630_050 0.0724146993 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000020_190 0.074955762 - - hypothetical protein RCOM_0452240 [Ricinus communis]
13 Hb_004310_130 0.0752284139 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
14 Hb_006827_020 0.075737032 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005663_060 0.0774259839 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
16 Hb_150360_030 0.0788568377 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
17 Hb_000618_040 0.0792610082 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
18 Hb_007416_280 0.0797680689 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000011_200 0.0823685294 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
20 Hb_000808_270 0.0828571003 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004055_030 Hb_004055_030 Hb_006922_100 Hb_006922_100 Hb_004055_030--Hb_006922_100 Hb_007441_120 Hb_007441_120 Hb_004055_030--Hb_007441_120 Hb_001124_160 Hb_001124_160 Hb_004055_030--Hb_001124_160 Hb_003813_130 Hb_003813_130 Hb_004055_030--Hb_003813_130 Hb_000445_420 Hb_000445_420 Hb_004055_030--Hb_000445_420 Hb_001199_020 Hb_001199_020 Hb_004055_030--Hb_001199_020 Hb_005663_060 Hb_005663_060 Hb_006922_100--Hb_005663_060 Hb_000020_190 Hb_000020_190 Hb_006922_100--Hb_000020_190 Hb_001862_190 Hb_001862_190 Hb_006922_100--Hb_001862_190 Hb_006922_100--Hb_007441_120 Hb_006922_100--Hb_001199_020 Hb_007441_120--Hb_005663_060 Hb_002016_110 Hb_002016_110 Hb_007441_120--Hb_002016_110 Hb_028872_140 Hb_028872_140 Hb_007441_120--Hb_028872_140 Hb_007441_120--Hb_000445_420 Hb_001124_160--Hb_000020_190 Hb_062135_030 Hb_062135_030 Hb_001124_160--Hb_062135_030 Hb_000166_110 Hb_000166_110 Hb_001124_160--Hb_000166_110 Hb_002374_050 Hb_002374_050 Hb_001124_160--Hb_002374_050 Hb_004310_130 Hb_004310_130 Hb_001124_160--Hb_004310_130 Hb_006827_020 Hb_006827_020 Hb_003813_130--Hb_006827_020 Hb_011930_160 Hb_011930_160 Hb_003813_130--Hb_011930_160 Hb_103012_010 Hb_103012_010 Hb_003813_130--Hb_103012_010 Hb_001946_010 Hb_001946_010 Hb_003813_130--Hb_001946_010 Hb_000523_050 Hb_000523_050 Hb_003813_130--Hb_000523_050 Hb_000445_420--Hb_005663_060 Hb_000445_420--Hb_002016_110 Hb_000445_420--Hb_006922_100 Hb_010931_120 Hb_010931_120 Hb_000445_420--Hb_010931_120 Hb_000058_100 Hb_000058_100 Hb_001199_020--Hb_000058_100 Hb_001006_140 Hb_001006_140 Hb_001199_020--Hb_001006_140 Hb_004724_200 Hb_004724_200 Hb_001199_020--Hb_004724_200 Hb_001199_020--Hb_007441_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.2258 17.8704 19.7478 21.3295 31.5066 42.869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.5439 23.1479 35.0314 26.8185 14.5966

CAGE analysis