Hb_002016_110

Information

Type -
Description -
Location Contig2016: 115191-120090
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20710g
description POPTRDRAFT_830431; transducin family protein
nr
ID XP_002302707.2
description transducin family protein [Populus trichocarpa]
swissprot
ID Q54QU5
description WD repeat-containing protein 89 homolog OS=Dictyostelium discoideum GN=wdr89 PE=3 SV=1
trembl
ID B9GS95
description Transducin family protein OS=Populus trichocarpa GN=POPTR_0002s20710g PE=4 SV=2
Gene Ontology
ID GO:0000398
description wd repeat-containing protein 89 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20503: 116913-118732 , PASA_asmbl_20505: 119058-119421 , PASA_asmbl_20506: 120485-125099 , PASA_asmbl_20507: 120485-121318
cDNA
(Sanger)
(ID:Location)		 023_P21.ab1: 120689-125099 , 026_K01.ab1: 120784-125092 , 041_L24.ab1: 120642-125099 , 047_P18.ab1: 120648-125099 , 052_E07.ab1: 120727-125099 , 053_P14.ab1: 120775-125099

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_110 0.0 - - transducin family protein [Populus trichocarpa]
2 Hb_006915_050 0.0494848228 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
3 Hb_002026_180 0.0561160848 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
4 Hb_007441_120 0.0603427098 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
5 Hb_005663_060 0.0618487932 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
6 Hb_189003_080 0.0620872421 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
7 Hb_000030_300 0.0645860853 - - Thioredoxin, putative [Ricinus communis]
8 Hb_005618_170 0.0664013163 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
9 Hb_003464_060 0.0673672423 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
10 Hb_000483_200 0.0675388732 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
11 Hb_006400_060 0.0687200744 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
12 Hb_006922_100 0.068909683 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
13 Hb_000445_420 0.06905119 - - protein transporter, putative [Ricinus communis]
14 Hb_004109_090 0.0692259579 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_001269_550 0.0706914493 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
16 Hb_005305_080 0.0711435387 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
17 Hb_003032_040 0.072320707 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
18 Hb_001248_130 0.0726315947 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
19 Hb_004254_120 0.0730702762 - - conserved hypothetical protein [Ricinus communis]
20 Hb_028872_140 0.0740132422 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002016_110 Hb_002016_110 Hb_006915_050 Hb_006915_050 Hb_002016_110--Hb_006915_050 Hb_002026_180 Hb_002026_180 Hb_002016_110--Hb_002026_180 Hb_007441_120 Hb_007441_120 Hb_002016_110--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_002016_110--Hb_005663_060 Hb_189003_080 Hb_189003_080 Hb_002016_110--Hb_189003_080 Hb_000030_300 Hb_000030_300 Hb_002016_110--Hb_000030_300 Hb_008695_210 Hb_008695_210 Hb_006915_050--Hb_008695_210 Hb_000754_040 Hb_000754_040 Hb_006915_050--Hb_000754_040 Hb_000111_360 Hb_000111_360 Hb_006915_050--Hb_000111_360 Hb_000907_080 Hb_000907_080 Hb_006915_050--Hb_000907_080 Hb_006915_050--Hb_189003_080 Hb_002026_180--Hb_000030_300 Hb_007416_280 Hb_007416_280 Hb_002026_180--Hb_007416_280 Hb_000571_120 Hb_000571_120 Hb_002026_180--Hb_000571_120 Hb_003766_040 Hb_003766_040 Hb_002026_180--Hb_003766_040 Hb_002026_180--Hb_189003_080 Hb_007441_120--Hb_005663_060 Hb_028872_140 Hb_028872_140 Hb_007441_120--Hb_028872_140 Hb_000445_420 Hb_000445_420 Hb_007441_120--Hb_000445_420 Hb_004055_030 Hb_004055_030 Hb_007441_120--Hb_004055_030 Hb_006922_100 Hb_006922_100 Hb_007441_120--Hb_006922_100 Hb_003092_040 Hb_003092_040 Hb_005663_060--Hb_003092_040 Hb_032202_190 Hb_032202_190 Hb_005663_060--Hb_032202_190 Hb_005663_060--Hb_006922_100 Hb_000409_020 Hb_000409_020 Hb_005663_060--Hb_000409_020 Hb_000567_260 Hb_000567_260 Hb_189003_080--Hb_000567_260 Hb_189003_080--Hb_008695_210 Hb_001671_020 Hb_001671_020 Hb_189003_080--Hb_001671_020 Hb_001248_130 Hb_001248_130 Hb_189003_080--Hb_001248_130 Hb_002496_030 Hb_002496_030 Hb_000030_300--Hb_002496_030 Hb_003175_010 Hb_003175_010 Hb_000030_300--Hb_003175_010 Hb_001242_060 Hb_001242_060 Hb_000030_300--Hb_001242_060 Hb_000808_270 Hb_000808_270 Hb_000030_300--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_000030_300--Hb_000926_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.512 7.77415 4.50086 6.16156 12.3515 15.2187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8027 12.9281 18.6406 10.0053 6.91964

CAGE analysis