Hb_189003_080

Information

Type -
Description -
Location Contig189003: 34811-42376
Sequence    

Annotation

kegg
ID rcu:RCOM_0105730
description rab3 gtpase-activating protein non-catalytic subunit, putative
nr
ID XP_012075808.1
description PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
swissprot
ID Q5U1Z0
description Rab3 GTPase-activating protein non-catalytic subunit OS=Rattus norvegicus GN=Rab3gap2 PE=1 SV=2
trembl
ID A0A067KR80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10550 PE=4 SV=1
Gene Ontology
ID GO:0005515
description rab3 gtpase-activating protein non-catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18744: 34920-42337 , PASA_asmbl_18746: 38065-38219
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189003_080 0.0 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
2 Hb_000567_260 0.0596831048 - - BnaA09g41440D [Brassica napus]
3 Hb_008695_210 0.0598010926 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
4 Hb_002016_110 0.0620872421 - - transducin family protein [Populus trichocarpa]
5 Hb_001671_020 0.0666100076 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
6 Hb_002026_180 0.0677717354 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
7 Hb_001248_130 0.0679571368 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
8 Hb_000907_080 0.0681766497 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
9 Hb_000207_250 0.0724762426 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
10 Hb_000200_340 0.0724768282 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
11 Hb_006915_050 0.0728763447 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
12 Hb_000754_040 0.0748936604 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
13 Hb_003464_060 0.0751677693 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
14 Hb_000000_250 0.0753854487 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
15 Hb_007951_050 0.0757083175 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_055062_030 0.0759324021 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
17 Hb_007380_070 0.0777194698 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
18 Hb_005305_080 0.0786706261 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
19 Hb_001898_220 0.079428229 - - PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1 [Jatropha curcas]
20 Hb_004907_110 0.0797751112 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_189003_080 Hb_189003_080 Hb_000567_260 Hb_000567_260 Hb_189003_080--Hb_000567_260 Hb_008695_210 Hb_008695_210 Hb_189003_080--Hb_008695_210 Hb_002016_110 Hb_002016_110 Hb_189003_080--Hb_002016_110 Hb_001671_020 Hb_001671_020 Hb_189003_080--Hb_001671_020 Hb_002026_180 Hb_002026_180 Hb_189003_080--Hb_002026_180 Hb_001248_130 Hb_001248_130 Hb_189003_080--Hb_001248_130 Hb_000567_260--Hb_001671_020 Hb_000614_230 Hb_000614_230 Hb_000567_260--Hb_000614_230 Hb_001329_300 Hb_001329_300 Hb_000567_260--Hb_001329_300 Hb_000567_260--Hb_001248_130 Hb_055062_030 Hb_055062_030 Hb_000567_260--Hb_055062_030 Hb_008695_210--Hb_000614_230 Hb_006915_050 Hb_006915_050 Hb_008695_210--Hb_006915_050 Hb_000907_080 Hb_000907_080 Hb_008695_210--Hb_000907_080 Hb_000754_040 Hb_000754_040 Hb_008695_210--Hb_000754_040 Hb_002006_090 Hb_002006_090 Hb_008695_210--Hb_002006_090 Hb_002016_110--Hb_006915_050 Hb_002016_110--Hb_002026_180 Hb_007441_120 Hb_007441_120 Hb_002016_110--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_002016_110--Hb_005663_060 Hb_000030_300 Hb_000030_300 Hb_002016_110--Hb_000030_300 Hb_007380_070 Hb_007380_070 Hb_001671_020--Hb_007380_070 Hb_001671_020--Hb_055062_030 Hb_002603_100 Hb_002603_100 Hb_001671_020--Hb_002603_100 Hb_001243_050 Hb_001243_050 Hb_001671_020--Hb_001243_050 Hb_002026_180--Hb_000030_300 Hb_007416_280 Hb_007416_280 Hb_002026_180--Hb_007416_280 Hb_000571_120 Hb_000571_120 Hb_002026_180--Hb_000571_120 Hb_003766_040 Hb_003766_040 Hb_002026_180--Hb_003766_040 Hb_020178_070 Hb_020178_070 Hb_001248_130--Hb_020178_070 Hb_001248_130--Hb_007441_120 Hb_000207_250 Hb_000207_250 Hb_001248_130--Hb_000207_250 Hb_001248_130--Hb_002016_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5455 8.42009 5.54651 5.79333 12.9692 17.7424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0402 16.2564 23.361 8.45405 5.89822

CAGE analysis