Hb_000768_040

Information

Type -
Description -
Location Contig768: 32505-44676
Sequence    

Annotation

kegg
ID rcu:RCOM_0845430
description hypothetical protein
nr
ID XP_012070337.1
description PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
swissprot
ID Q9CSU0
description Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus musculus GN=Rprd1b PE=1 SV=2
trembl
ID A0A067L6A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02639 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57486: 32585-45388 , PASA_asmbl_57487: 37289-45369 , PASA_asmbl_57488: 35753-36107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000768_040 0.0 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
2 Hb_003464_060 0.0541747516 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
3 Hb_002603_120 0.066928161 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
4 Hb_001021_170 0.0680719394 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
5 Hb_001226_030 0.0682173913 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
6 Hb_004684_010 0.069116754 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
7 Hb_004355_020 0.071644952 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
8 Hb_007416_180 0.0763640438 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
9 Hb_000571_120 0.0772244147 - - importin beta-1, putative [Ricinus communis]
10 Hb_120327_010 0.0803332777 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
11 Hb_045793_010 0.0821650209 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
12 Hb_000827_070 0.0827877168 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
13 Hb_004724_060 0.0849267317 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
14 Hb_001489_150 0.0856728088 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
15 Hb_001019_230 0.0863615618 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
16 Hb_001242_060 0.0864226804 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
17 Hb_000577_010 0.0867904922 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
18 Hb_002026_180 0.0868149711 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
19 Hb_031527_040 0.0874069751 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
20 Hb_000030_300 0.0881186148 - - Thioredoxin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000768_040 Hb_000768_040 Hb_003464_060 Hb_003464_060 Hb_000768_040--Hb_003464_060 Hb_002603_120 Hb_002603_120 Hb_000768_040--Hb_002603_120 Hb_001021_170 Hb_001021_170 Hb_000768_040--Hb_001021_170 Hb_001226_030 Hb_001226_030 Hb_000768_040--Hb_001226_030 Hb_004684_010 Hb_004684_010 Hb_000768_040--Hb_004684_010 Hb_004355_020 Hb_004355_020 Hb_000768_040--Hb_004355_020 Hb_000030_300 Hb_000030_300 Hb_003464_060--Hb_000030_300 Hb_002016_110 Hb_002016_110 Hb_003464_060--Hb_002016_110 Hb_003464_060--Hb_004684_010 Hb_004907_110 Hb_004907_110 Hb_003464_060--Hb_004907_110 Hb_002026_180 Hb_002026_180 Hb_003464_060--Hb_002026_180 Hb_000853_420 Hb_000853_420 Hb_002603_120--Hb_000853_420 Hb_001595_030 Hb_001595_030 Hb_002603_120--Hb_001595_030 Hb_002603_120--Hb_000030_300 Hb_000629_010 Hb_000629_010 Hb_002603_120--Hb_000629_010 Hb_005188_050 Hb_005188_050 Hb_002603_120--Hb_005188_050 Hb_004491_010 Hb_004491_010 Hb_002603_120--Hb_004491_010 Hb_015807_070 Hb_015807_070 Hb_001021_170--Hb_015807_070 Hb_001021_170--Hb_004355_020 Hb_045793_010 Hb_045793_010 Hb_001021_170--Hb_045793_010 Hb_006847_040 Hb_006847_040 Hb_001021_170--Hb_006847_040 Hb_007416_180 Hb_007416_180 Hb_001021_170--Hb_007416_180 Hb_007163_090 Hb_007163_090 Hb_001226_030--Hb_007163_090 Hb_123352_020 Hb_123352_020 Hb_001226_030--Hb_123352_020 Hb_000577_010 Hb_000577_010 Hb_001226_030--Hb_000577_010 Hb_000487_290 Hb_000487_290 Hb_001226_030--Hb_000487_290 Hb_004724_060 Hb_004724_060 Hb_001226_030--Hb_004724_060 Hb_004684_010--Hb_007416_180 Hb_002311_040 Hb_002311_040 Hb_004684_010--Hb_002311_040 Hb_004684_010--Hb_015807_070 Hb_004684_010--Hb_004724_060 Hb_007254_070 Hb_007254_070 Hb_004355_020--Hb_007254_070 Hb_011671_430 Hb_011671_430 Hb_004355_020--Hb_011671_430 Hb_004355_020--Hb_000629_010 Hb_011218_040 Hb_011218_040 Hb_004355_020--Hb_011218_040 Hb_006788_020 Hb_006788_020 Hb_004355_020--Hb_006788_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.0711 55.5117 20.03 19.7204 41.1253 66.1221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.9869 49.9181 53.1183 29.2769 26.9063

CAGE analysis