Hb_006788_020

Information

Type -
Description -
Location Contig6788: 18509-19117
Sequence    

Annotation

kegg
ID rcu:RCOM_0990950
description hypothetical protein
nr
ID KDP21393.1
description hypothetical protein JCGZ_21864 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JF40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21864 PE=4 SV=1
Gene Ontology
ID GO:0009536
description hypothetical protein JCGZ_21864

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53646: 18895-19262 , PASA_asmbl_53647: 19953-20367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006788_020 0.0 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
2 Hb_004355_020 0.0671767685 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
3 Hb_000556_160 0.0772644596 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
4 Hb_000629_010 0.081030578 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
5 Hb_011218_040 0.0833563033 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
6 Hb_000739_100 0.0896659033 - - ku P80 DNA helicase, putative [Ricinus communis]
7 Hb_000571_120 0.0897897293 - - importin beta-1, putative [Ricinus communis]
8 Hb_000856_310 0.0922239412 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
9 Hb_004994_220 0.0932055112 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
10 Hb_003761_010 0.096208211 - - alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_010931_120 0.0966282987 - - myosin heavy chain-related family protein [Populus trichocarpa]
12 Hb_000189_560 0.0968840335 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
13 Hb_000260_270 0.0976290708 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000173_490 0.0980868331 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
15 Hb_000185_030 0.0981163807 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
16 Hb_002686_030 0.0984860149 - - PREDICTED: uncharacterized protein LOC105632635 isoform X1 [Jatropha curcas]
17 Hb_011485_070 0.0990115235 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
18 Hb_007254_070 0.0994681427 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
19 Hb_166236_010 0.1000274314 - - -
20 Hb_165928_030 0.1007534751 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006788_020 Hb_006788_020 Hb_004355_020 Hb_004355_020 Hb_006788_020--Hb_004355_020 Hb_000556_160 Hb_000556_160 Hb_006788_020--Hb_000556_160 Hb_000629_010 Hb_000629_010 Hb_006788_020--Hb_000629_010 Hb_011218_040 Hb_011218_040 Hb_006788_020--Hb_011218_040 Hb_000739_100 Hb_000739_100 Hb_006788_020--Hb_000739_100 Hb_000571_120 Hb_000571_120 Hb_006788_020--Hb_000571_120 Hb_007254_070 Hb_007254_070 Hb_004355_020--Hb_007254_070 Hb_011671_430 Hb_011671_430 Hb_004355_020--Hb_011671_430 Hb_001021_170 Hb_001021_170 Hb_004355_020--Hb_001021_170 Hb_004355_020--Hb_000629_010 Hb_004355_020--Hb_011218_040 Hb_002686_030 Hb_002686_030 Hb_000556_160--Hb_002686_030 Hb_001341_170 Hb_001341_170 Hb_000556_160--Hb_001341_170 Hb_004724_150 Hb_004724_150 Hb_000556_160--Hb_004724_150 Hb_002499_040 Hb_002499_040 Hb_000556_160--Hb_002499_040 Hb_003294_070 Hb_003294_070 Hb_000556_160--Hb_003294_070 Hb_000185_030 Hb_000185_030 Hb_000556_160--Hb_000185_030 Hb_000808_270 Hb_000808_270 Hb_000629_010--Hb_000808_270 Hb_000030_300 Hb_000030_300 Hb_000629_010--Hb_000030_300 Hb_002603_120 Hb_002603_120 Hb_000629_010--Hb_002603_120 Hb_000629_010--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_000629_010--Hb_039946_020 Hb_000260_270 Hb_000260_270 Hb_011218_040--Hb_000260_270 Hb_005064_060 Hb_005064_060 Hb_011218_040--Hb_005064_060 Hb_010931_120 Hb_010931_120 Hb_011218_040--Hb_010931_120 Hb_000123_210 Hb_000123_210 Hb_011218_040--Hb_000123_210 Hb_001157_090 Hb_001157_090 Hb_000739_100--Hb_001157_090 Hb_002900_090 Hb_002900_090 Hb_000739_100--Hb_002900_090 Hb_005000_260 Hb_005000_260 Hb_000739_100--Hb_005000_260 Hb_000703_150 Hb_000703_150 Hb_000739_100--Hb_000703_150 Hb_006922_010 Hb_006922_010 Hb_000739_100--Hb_006922_010 Hb_000739_100--Hb_002686_030 Hb_002026_180 Hb_002026_180 Hb_000571_120--Hb_002026_180 Hb_002137_020 Hb_002137_020 Hb_000571_120--Hb_002137_020 Hb_007441_200 Hb_007441_200 Hb_000571_120--Hb_007441_200 Hb_000953_020 Hb_000953_020 Hb_000571_120--Hb_000953_020 Hb_000768_040 Hb_000768_040 Hb_000571_120--Hb_000768_040 Hb_000805_020 Hb_000805_020 Hb_000571_120--Hb_000805_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.33726 11.1439 5.32134 5.14401 6.66491 11.9407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7415 8.84958 11.0212 13.6452 4.51749

CAGE analysis