Hb_007254_070

Information

Type -
Description -
Location Contig7254: 54838-62725
Sequence    

Annotation

kegg
ID rcu:RCOM_0136880
description Ran GTPase binding protein, putative
nr
ID XP_012066050.1
description PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
swissprot
ID Q15751
description Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2
trembl
ID A0A067LFW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25205 PE=4 SV=1
Gene Ontology
ID GO:0016874
description e3 ubiquitin-protein ligase herc1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55839: 55255-56790
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007254_070 0.0 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
2 Hb_167498_010 0.056418363 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
3 Hb_004355_020 0.0629944792 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
4 Hb_120327_010 0.0645037059 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
5 Hb_002903_060 0.0652461333 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
6 Hb_000395_130 0.0654217549 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
7 Hb_003158_010 0.0660476891 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
8 Hb_004800_080 0.0676514025 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
9 Hb_001638_270 0.068909932 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
10 Hb_000329_470 0.0699262174 - - ccr4-not transcription complex, putative [Ricinus communis]
11 Hb_000096_070 0.0720734351 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
12 Hb_000574_540 0.0743383517 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000225_040 0.0748609068 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
14 Hb_000780_230 0.0749116041 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
15 Hb_000487_290 0.0749276533 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
16 Hb_011491_010 0.0754598807 - - Protein YME1, putative [Ricinus communis]
17 Hb_000343_120 0.0758756576 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
18 Hb_007765_110 0.0777252993 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
19 Hb_123352_020 0.077777215 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
20 Hb_001369_730 0.0804061597 - - F5O11.10, putative isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_007254_070 Hb_007254_070 Hb_167498_010 Hb_167498_010 Hb_007254_070--Hb_167498_010 Hb_004355_020 Hb_004355_020 Hb_007254_070--Hb_004355_020 Hb_120327_010 Hb_120327_010 Hb_007254_070--Hb_120327_010 Hb_002903_060 Hb_002903_060 Hb_007254_070--Hb_002903_060 Hb_000395_130 Hb_000395_130 Hb_007254_070--Hb_000395_130 Hb_003158_010 Hb_003158_010 Hb_007254_070--Hb_003158_010 Hb_001369_730 Hb_001369_730 Hb_167498_010--Hb_001369_730 Hb_167498_010--Hb_003158_010 Hb_001409_020 Hb_001409_020 Hb_167498_010--Hb_001409_020 Hb_000329_470 Hb_000329_470 Hb_167498_010--Hb_000329_470 Hb_000225_040 Hb_000225_040 Hb_167498_010--Hb_000225_040 Hb_011671_430 Hb_011671_430 Hb_004355_020--Hb_011671_430 Hb_001021_170 Hb_001021_170 Hb_004355_020--Hb_001021_170 Hb_000629_010 Hb_000629_010 Hb_004355_020--Hb_000629_010 Hb_011218_040 Hb_011218_040 Hb_004355_020--Hb_011218_040 Hb_006788_020 Hb_006788_020 Hb_004355_020--Hb_006788_020 Hb_000827_070 Hb_000827_070 Hb_120327_010--Hb_000827_070 Hb_044728_010 Hb_044728_010 Hb_120327_010--Hb_044728_010 Hb_004800_080 Hb_004800_080 Hb_120327_010--Hb_004800_080 Hb_120327_010--Hb_000225_040 Hb_000107_330 Hb_000107_330 Hb_120327_010--Hb_000107_330 Hb_000245_040 Hb_000245_040 Hb_002903_060--Hb_000245_040 Hb_000028_280 Hb_000028_280 Hb_002903_060--Hb_000028_280 Hb_000191_150 Hb_000191_150 Hb_002903_060--Hb_000191_150 Hb_002213_070 Hb_002213_070 Hb_002903_060--Hb_002213_070 Hb_011485_070 Hb_011485_070 Hb_002903_060--Hb_011485_070 Hb_000092_020 Hb_000092_020 Hb_000395_130--Hb_000092_020 Hb_001080_230 Hb_001080_230 Hb_000395_130--Hb_001080_230 Hb_000003_190 Hb_000003_190 Hb_000395_130--Hb_000003_190 Hb_000441_120 Hb_000441_120 Hb_000395_130--Hb_000441_120 Hb_006420_040 Hb_006420_040 Hb_000395_130--Hb_006420_040 Hb_012779_090 Hb_012779_090 Hb_000395_130--Hb_012779_090 Hb_003158_010--Hb_000329_470 Hb_003158_010--Hb_000225_040 Hb_002025_020 Hb_002025_020 Hb_003158_010--Hb_002025_020 Hb_000011_200 Hb_000011_200 Hb_003158_010--Hb_000011_200 Hb_000347_070 Hb_000347_070 Hb_003158_010--Hb_000347_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.87543 5.96841 2.49202 2.45933 5.45869 5.21274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.18606 4.55058 4.71689 4.86572 3.34108

CAGE analysis